CuGenDBv2

Gene ID	Spg003562
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PsbP domain-containing protein
Genome location	scaffold4:44988769..44989443
RNA-Seq Expression	Spg003562
Synteny	Spg003562
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8651593.1 hypothetical protein Csa_023453 [Cucumis sativus]

2.0e-91

82.51

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        MQ TTIASSS  SIFFNPLLNFT+S PI PPKS   ST+VA+S GLQ QT  ICARKKKR  GFQRSTKLV ELASLLA+NLKILPPPLDLVVAELSGGD
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWRGFGGG YDGWRGKRKKTPLLIGFLIVCG+ LLF+T+ EI+ VCGVLGFA+F VALIQLWQK GIS DFV GFGLFGILIALGLRRSEVQ 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKK
        WVGKLGIYS K K LRRK K  K
Subjt:  WVGKLGIYSPKMKRLRRKFKAKK

KAG7030256.1 hypothetical protein SDJN02_08603, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.9e-92

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        MQ T IA SSH SIFFNPLLNFTIS P+IP  S   STLVA+S G +AQTSIICARKK+RR  F RSTK+VLELASLLA+NLKILPPPLDLVVAELSGG+
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWR FGGGGYDGWRGKRKKTPLLIGFLI+CG+ L   T+ E+DA+CG LGFALFSVALIQLWQ+SGIS  FVWGFGLFGILIALGLRRSEVQ 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKKIF
        W GKLG Y PKMK LRRK + KKIF
Subjt:  WVGKLGIYSPKMKRLRRKFKAKKIF

XP_004139360.1 uncharacterized protein LOC101213268 [Cucumis sativus]

1.1e-92

82.22

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        MQ TTIASSS  SIFFNPLLNFT+S PI PPKS   ST+VA+S GLQ QT  ICARKKKR  GFQRSTKLV ELASLLA+NLKILPPPLDLVVAELSGGD
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWRGFGGG YDGWRGKRKKTPLLIGFLIVCG+ LLF+T+ EI+ VCGVLGFA+F VALIQLWQK GIS DFV GFGLFGILIALGLRRSEVQ 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKKIF
        WVGKLGIYS K K LRRK K ++IF
Subjt:  WVGKLGIYSPKMKRLRRKFKAKKIF

XP_008454859.1 PREDICTED: uncharacterized protein LOC103495165 [Cucumis melo]

4.0e-92

80.89

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        M  T IASSS  SIFFNPLLNFT+S PI PPKSP  STLVA+S GLQ QT  ICARKKKR  GFQRSTKLVLELASLLA+N+KILPPPLDLVVAELSGGD
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWRGFGGG YDGWRGKRKKTPL IGFL+VCG+ LLF+T+ EI+ VCG+LGFA+FSVALIQLWQK GIS  FV GFGLFGILIALGLRRSEVQ 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKKIF
        WV KLG YSPKMK LRRK K ++IF
Subjt:  WVGKLGIYSPKMKRLRRKFKAKKIF

XP_038886968.1 uncharacterized protein LOC120077138 [Benincasa hispida]

3.4e-99

84.89

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        MQ T I  SS GSIFFNPLLNFT+S PIIPP+SP  STLVA+S GLQAQTSIICARKKK+  GFQRSTKL+LELASLL +NLKILPPPLDLVV ELSGGD
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWRGFGGGGYDGWRGKRKK PLLIGFLIVCG+ LLF+T+ EID VCGVLGFALFSVALIQLW KSGIS DFVWGFGLFGILIALGLRRSE+Q 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKKIF
        WVGKLGIYSPKMK LRRK + KKIF
Subjt:  WVGKLGIYSPKMKRLRRKFKAKKIF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFR0 Uncharacterized protein

5.1e-93

82.22

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        MQ TTIASSS  SIFFNPLLNFT+S PI PPKS   ST+VA+S GLQ QT  ICARKKKR  GFQRSTKLV ELASLLA+NLKILPPPLDLVVAELSGGD
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWRGFGGG YDGWRGKRKKTPLLIGFLIVCG+ LLF+T+ EI+ VCGVLGFA+F VALIQLWQK GIS DFV GFGLFGILIALGLRRSEVQ 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKKIF
        WVGKLGIYS K K LRRK K ++IF
Subjt:  WVGKLGIYSPKMKRLRRKFKAKKIF

A0A1S3C0R6 uncharacterized protein LOC103495165

2.0e-92

80.89

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        M  T IASSS  SIFFNPLLNFT+S PI PPKSP  STLVA+S GLQ QT  ICARKKKR  GFQRSTKLVLELASLLA+N+KILPPPLDLVVAELSGGD
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWRGFGGG YDGWRGKRKKTPL IGFL+VCG+ LLF+T+ EI+ VCG+LGFA+FSVALIQLWQK GIS  FV GFGLFGILIALGLRRSEVQ 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKKIF
        WV KLG YSPKMK LRRK K ++IF
Subjt:  WVGKLGIYSPKMKRLRRKFKAKKIF

A0A5D3D456 Uncharacterized protein

2.0e-92

80.89

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        M  T IASSS  SIFFNPLLNFT+S PI PPKSP  STLVA+S GLQ QT  ICARKKKR  GFQRSTKLVLELASLLA+N+KILPPPLDLVVAELSGGD
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWRGFGGG YDGWRGKRKKTPL IGFL+VCG+ LLF+T+ EI+ VCG+LGFA+FSVALIQLWQK GIS  FV GFGLFGILIALGLRRSEVQ 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKKIF
        WV KLG YSPKMK LRRK K ++IF
Subjt:  WVGKLGIYSPKMKRLRRKFKAKKIF

A0A6J1DB34 uncharacterized protein LOC111018844

2.8e-91

82.43

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Query:  PTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGDGN
        P   +S SH SIFFNPLLNFTIS P +P KSPIFS+LVAIS GLQ QT I+ ARKKKRR GFQRSTKLVLELASLLA+NLKILPPPLDLVVAELSGGDG+
Subjt:  PTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGDGN

Query:  GGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGISDFVWGFGLFGILIALGLRRSEVQNWVG
        GGG+ LWRGFGGGGYDGWRGKRKKT LLIGFLIVCG+ LLF TELEIDAVCG+LGFALFSVALIQLWQKS       GF LFGILIALGLRRSEVQ WVG
Subjt:  GGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGISDFVWGFGLFGILIALGLRRSEVQNWVG

Query:  KLGIYSPKMKRLRRKFKAKKIF
        KLGIYSPKMK LRRK K KK+F
Subjt:  KLGIYSPKMKRLRRKFKAKKIF

Q84KA4 Uncharacterized protein

1.7e-91

80.44

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Query:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD
        M  T IASSS  SIFFNPLLNFT+S PI PPKSP  STLVA+S GLQ QT  ICARKKKR  GFQRSTKLVLELASLLA+N+KILPPPLDLVVAELSGGD
Subjt:  MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGD

Query:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN
        GNGGGSRLWRGFG G YDGWRGKRKKTPL IGFL+VCG+ LLF+T+ EI+ VCG+LGFA+FSVALIQLWQK GIS  FV GFGLFGILIALGLRRSEVQ 
Subjt:  GNGGGSRLWRGFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGIS-DFVWGFGLFGILIALGLRRSEVQN

Query:  WVGKLGIYSPKMKRLRRKFKAKKIF
        WV KLG YSPKMK LRRK K ++IF
Subjt:  WVGKLGIYSPKMKRLRRKFKAKKIF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G27440.1 unknown protein

5.7e-20

39.19

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Query:  PPKSPIFSTLVAISPGL----QAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGDGNGGGS---RLWRGFGGGGYDGWRG
        P KS   S++  +S  +    Q Q+ ++CA+K+K+R G++R T+ +    SLLA NL+ILP PLDLV+A+L G DG GGG      WRG+  G +DGWR 
Subjt:  PPKSPIFSTLVAISPGL----QAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGDGNGGGS---RLWRGFGGGGYDGWRG

Query:  KRKKTPLLIGFLIVC---GITLLFLTELEIDAVCGVLGFALFSVALIQ
        K+ K P+L+   ++    G   +   E++ + V  VLG  LF V +++
Subjt:  KRKKTPLLIGFLIVC---GITLLFLTELEIDAVCGVLGFALFSVALIQ

Sequences

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CDS sequence

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ATGCAGCCCACAACTATAGCTTCTTCTTCACATGGCTCCATTTTCTTCAACCCACTTCTCAATTTCACCATTTCAACTCCCATAATTCCACCAAAATCGCCAATCTTCTC
GACCCTCGTAGCAATTTCCCCTGGATTGCAAGCTCAAACGTCGATCATTTGCGCAAGGAAGAAGAAGAGACGTACCGGGTTTCAAAGATCGACCAAATTGGTGCTGGAAT
TGGCGTCCCTCTTAGCCGCCAATCTCAAGATCTTACCGCCGCCGCTGGATTTGGTCGTCGCGGAATTGAGCGGCGGAGATGGAAACGGAGGTGGTTCGCGGTTGTGGAGG
GGATTCGGCGGAGGTGGCTATGATGGATGGAGAGGTAAAAGGAAGAAGACGCCATTGTTGATTGGGTTTTTGATTGTTTGTGGTATCACTTTGTTGTTTTTGACTGAATT
AGAGATCGATGCGGTTTGTGGGGTTCTTGGTTTTGCTCTATTTAGTGTTGCATTGATTCAATTGTGGCAGAAAAGTGGGATTTCGGATTTCGTTTGGGGGTTTGGCCTTT
TCGGCATTTTGATTGCCTTGGGATTGAGAAGATCTGAGGTGCAAAATTGGGTTGGAAAATTAGGGATTTACAGTCCAAAGATGAAGAGGTTAAGAAGAAAATTTAAAGCC
AAGAAAATTTTCTGA

mRNA sequence

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Protein sequence

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MQPTTIASSSHGSIFFNPLLNFTISTPIIPPKSPIFSTLVAISPGLQAQTSIICARKKKRRTGFQRSTKLVLELASLLAANLKILPPPLDLVVAELSGGDGNGGGSRLWR
GFGGGGYDGWRGKRKKTPLLIGFLIVCGITLLFLTELEIDAVCGVLGFALFSVALIQLWQKSGISDFVWGFGLFGILIALGLRRSEVQNWVGKLGIYSPKMKRLRRKFKA
KKIF

Spg003562 (gene) of Sponge gourd (cylindrica) v1 genome