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Spg003563 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003563
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationscaffold4:48526378..48526728
RNA-Seq ExpressionSpg003563
SyntenySpg003563
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599476.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]4.4e-5083.9Show/hide
Query:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        MAA +V +E  RNL+A+ PIEFLFDLDMVLSGADDFGCCQ+SASDSLVADLPTVVADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCR
Subjt:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

Query:  CTVAGHPPEAPSS-LIRR
        C ++G PPE+PSS LIRR
Subjt:  CTVAGHPPEAPSS-LIRR

KAG7030453.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-5083.9Show/hide
Query:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        MAA +V +E  RNL+A+ PIEFLFDLDMVLSGADDFGCCQ+SASDSLVADLPTVVADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCR
Subjt:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

Query:  CTVAGHPPEAPSS-LIRR
        C ++G PPE+PSS LIRR
Subjt:  CTVAGHPPEAPSS-LIRR

XP_022946863.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]2.0e-5084.75Show/hide
Query:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        MAA +V +E  RNL+A+ PIEFLFDLDMVLSGADDFGCCQ+SASDSLVADLPTVVADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCR
Subjt:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

Query:  CTVAGHPPEAPSS-LIRR
        C +AG PPE+PSS LIRR
Subjt:  CTVAGHPPEAPSS-LIRR

XP_023545409.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]4.4e-5084.75Show/hide
Query:  MAAAAVMSEPARNLS-ASPIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        MAA +V +E  RNL+ A PIEFLFDLDMVLSGADDFGCCQ+SASDSLVADLPTVVADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCR
Subjt:  MAAAAVMSEPARNLS-ASPIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

Query:  CTVAGHPPEAPSS-LIRR
        C +AG PPE+PSS LIRR
Subjt:  CTVAGHPPEAPSS-LIRR

XP_038877422.1 E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]2.9e-4984.62Show/hide
Query:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        MAAAAVM+EP RNL A+ PIEFLFDLDMVLSGADDFGCCQ+SA+DSLVADLP VVADVCAVCLEDF PDE GKQIPCGHVYHESCISSWL V DCCPLCR
Subjt:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

Query:  CTVAGHPPEAPSSLIRR
        C VAG PP+  S+LIRR
Subjt:  CTVAGHPPEAPSSLIRR

TrEMBL top hitse value%identityAlignment
A0A0A0LKR7 RING-type domain-containing protein9.3e-4679.49Show/hide
Query:  MAAAAVMSEPARNL-SASPIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        MAAAAVM+EP  NL S  PIEFLFDLD VLSGADD GCCQ++ SDS VAD PTVVADVCAVCL+DF PDE GKQIPCGHVYHESCISSWL V DCCPLCR
Subjt:  MAAAAVMSEPARNL-SASPIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

Query:  CTVAGHPPEAPSSLIRR
        C VAG PP+  S+LIRR
Subjt:  CTVAGHPPEAPSSLIRR

A0A1S4DZX3 RING-H2 finger protein ATL5-like1.9e-4377.97Show/hide
Query:  MAAAAVMSEPARNL-SASPIEFLFDLDMVLSGADDFGC-CQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLC
        MAAAAVM+EP   L S  PIEFLFDLD VLSGADD  C CQ++ SDS VAD PTVVADVCAVCL+DFRPDE GKQIPCGHVYHESCISSWL V DCCPLC
Subjt:  MAAAAVMSEPARNL-SASPIEFLFDLDMVLSGADDFGC-CQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLC

Query:  RCTVAGHPPEAPSSLIRR
        RC VAG PP+  S+LIRR
Subjt:  RCTVAGHPPEAPSSLIRR

A0A5A7V2P4 RING-H2 finger protein ATL5-like1.9e-4377.97Show/hide
Query:  MAAAAVMSEPARNL-SASPIEFLFDLDMVLSGADDFGC-CQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLC
        MAAAAVM+EP   L S  PIEFLFDLD VLSGADD  C CQ++ SDS VAD PTVVADVCAVCL+DFRPDE GKQIPCGHVYHESCISSWL V DCCPLC
Subjt:  MAAAAVMSEPARNL-SASPIEFLFDLDMVLSGADDFGC-CQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLC

Query:  RCTVAGHPPEAPSSLIRR
        RC VAG PP+  S+LIRR
Subjt:  RCTVAGHPPEAPSSLIRR

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like9.0e-4174.58Show/hide
Query:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSA---SDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP
        MAA AV++E  RNL+A+ P+E LFDLDMVLSG DDFGCC V+A   SDS+VADLPTVVADVCAVC EDFR DEGGKQIPCGHVYHE CISSWLAV DCCP
Subjt:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSA---SDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCP

Query:  LCRCTVAGHPPEAPSSLI
        LCR  V   PP  PS+ I
Subjt:  LCRCTVAGHPPEAPSSLI

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like9.6e-5184.75Show/hide
Query:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        MAA +V +E  RNL+A+ PIEFLFDLDMVLSGADDFGCCQ+SASDSLVADLPTVVADVCAVCLEDFRPDE GKQIPCGHVYHESCISSWLAV +CCPLCR
Subjt:  MAAAAVMSEPARNLSAS-PIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

Query:  CTVAGHPPEAPSS-LIRR
        C +AG PPE+PSS LIRR
Subjt:  CTVAGHPPEAPSS-LIRR

SwissProt top hitse value%identityAlignment
Q8LPN7 E3 ubiquitin-protein ligase RING1-like1.9e-0835.53Show/hide
Query:  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPE
        AS S +  LPTV           + CAVC+++F      KQ+PC HV+H+ C+  WL + + CP+CR  +    P+
Subjt:  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPE

Q91YL2 E3 ubiquitin-protein ligase RNF1261.9e-0846.81Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAG
        C VC ED+   E  +Q+PC H++H+SCI  WL   D CP+CR ++ G
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAG

Q9D0C1 E3 ubiquitin-protein ligase RNF1151.9e-0838.03Show/hide
Query:  ASDSLVADLPTVVAD--------VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAG
        A    +  LPTV            C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+CR ++ G
Subjt:  ASDSLVADLPTVVAD--------VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAG

Q9VHI7 E3 ubiquitin-protein ligase Iruka2.3e-0938.6Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPEAPSSLI
        C++C +DF+ DE  +++PC H+YHE+CI  WL +   CP+CR ++A    +A    +
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPEAPSSLI

Q9Y4L5 E3 ubiquitin-protein ligase RNF1151.9e-0838.03Show/hide
Query:  ASDSLVADLPTVVAD--------VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAG
        A    +  LPTV            C VC ED+  +E  +Q+PC H +H SCI  WL + D CP+CR ++ G
Subjt:  ASDSLVADLPTVVAD--------VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAG

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein5.6e-1145.61Show/hide
Query:  LVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTV
        ++ D   V   VCA+C E+F   E GK++ C H+YH SCI SWL + + CP+CR  V
Subjt:  LVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTV

AT2G39720.1 RING-H2 finger C2A3.1e-0936.99Show/hide
Query:  CCQVSASDSLVADLPTVVADV----------CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        C    AS S +  LP +  D           CAVC E+F      +++PC H+YH  CI  WLA+ + CP+CR
Subjt:  CCQVSASDSLVADLPTVVADV----------CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR

AT2G44330.1 RING/U-box superfamily protein1.8e-0942.86Show/hide
Query:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPEAPSSL
        CA+C EDF   E  +++PC H+YH  CI  WL   + CPLCR  +     E  S L
Subjt:  CAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPEAPSSL

AT3G19950.1 RING/U-box superfamily protein1.4e-0935.53Show/hide
Query:  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPE
        AS S +  LPTV           + CAVC+++F      KQ+PC HV+H+ C+  WL + + CP+CR  +    P+
Subjt:  ASDSLVADLPTVVA---------DVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPE

AT3G60080.1 RING/U-box superfamily protein1.4e-0951.16Show/hide
Query:  VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR
        +CAVC EDF   E  +++PC H+YH  CI  WL+  + CPLCR
Subjt:  VCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCCGCCGTGATGTCGGAGCCGGCAAGAAACTTATCGGCTTCTCCAATCGAATTTCTGTTCGACCTGGACATGGTTCTGTCGGGAGCCGACGACTTCGGTTG
CTGCCAGGTCAGCGCTTCCGATTCGCTGGTGGCGGATCTGCCGACTGTGGTTGCCGATGTTTGCGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAA
TCCCCTGCGGCCACGTCTACCACGAGTCTTGTATTTCATCTTGGCTCGCCGTCGGCGACTGTTGCCCTCTCTGTCGGTGCACCGTCGCCGGCCATCCGCCGGAAGCGCCT
TCGAGTTTGATCCGACGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGCCGCCGTGATGTCGGAGCCGGCAAGAAACTTATCGGCTTCTCCAATCGAATTTCTGTTCGACCTGGACATGGTTCTGTCGGGAGCCGACGACTTCGGTTG
CTGCCAGGTCAGCGCTTCCGATTCGCTGGTGGCGGATCTGCCGACTGTGGTTGCCGATGTTTGCGCCGTTTGTTTGGAGGATTTCCGGCCAGATGAGGGCGGAAAACAAA
TCCCCTGCGGCCACGTCTACCACGAGTCTTGTATTTCATCTTGGCTCGCCGTCGGCGACTGTTGCCCTCTCTGTCGGTGCACCGTCGCCGGCCATCCGCCGGAAGCGCCT
TCGAGTTTGATCCGACGGTAG
Protein sequenceShow/hide protein sequence
MAAAAVMSEPARNLSASPIEFLFDLDMVLSGADDFGCCQVSASDSLVADLPTVVADVCAVCLEDFRPDEGGKQIPCGHVYHESCISSWLAVGDCCPLCRCTVAGHPPEAP
SSLIRR