CuGenDBv2

Gene ID	Spg003575
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	WD repeat-containing protein 48
Genome location	scaffold4:45747336..45750187
RNA-Seq Expression	Spg003575
Synteny	Spg003575
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0016579 - protein deubiquitination (biological process) GO:0043130 - ubiquitin binding (molecular function)
InterPro domains	IPR021772 - WDR48/Bun107

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021139.1 WD repeat-containing protein 48, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-42

91.84

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

XP_022937659.1 WD repeat-containing protein 48-like isoform X1 [Cucurbita moschata]

2.9e-42

91.84

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

XP_022937661.1 WD repeat-containing protein 48-like isoform X2 [Cucurbita moschata]

2.9e-42

91.84

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

XP_022965590.1 WD repeat-containing protein 48-like isoform X1 [Cucurbita maxima]

2.9e-42

91.84

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

XP_023537766.1 WD repeat-containing protein 48 [Cucurbita pepo subsp. pepo]

2.9e-42

91.84

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP19 WD repeat-containing protein 48

1.9e-42

90.82

Show/hide

Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ V+K VVNYV+EKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNY+V+Q R
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

A0A6J1FAZ8 WD repeat-containing protein 48-like isoform X2

1.4e-42

91.84

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

A0A6J1FHE9 WD repeat-containing protein 48-like isoform X1

1.4e-42

91.84

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

A0A6J1HKR1 WD repeat-containing protein 48-like isoform X2

1.4e-42

91.84

Show/hide

Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

A0A6J1HP49 WD repeat-containing protein 48-like isoform X1

1.4e-42

91.84

Show/hide

Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR
        +I+ VNK VVNYVVEKMVLDKPLDNVNPD+ FG GLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR+LQGR
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

SwissProt top hits

e value

%identity

Alignment

Q16MY0 WD repeat-containing protein 48 homolog

7.9e-06

33.33

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Query:  VIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKL--KPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        +I N+F+    V + VL+K L     D+P  +G S++  + S         ++  +  IE+LCN+ +  P+M L TVR++IWK+  DL  +YR
Subjt:  VIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKL--KPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q32PG3 WD repeat-containing protein 48

3.9e-05

57.14

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Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q4R2Z6 WD repeat-containing protein 48

3.9e-05

57.14

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Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q5F3K4 WD repeat-containing protein 48

3.9e-05

57.14

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Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Q8TAF3 WD repeat-containing protein 48

3.9e-05

57.14

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Query:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR
        IE+LC +QVL P+M L TV+++IWK   DL L+YR
Subjt:  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR

Arabidopsis top hits

e value

%identity

Alignment

AT3G05090.1 Transducin/WD40 repeat-like superfamily protein

1.5e-28

65.35

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSST---VGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQG
        +I+ V+K V NYVVEKMVLD PLD++  D    SG        G+G  +SGLKPWQKL+PSIEILCN+QVLSPDMSLATVR Y+WKKPEDL+LNYRV   
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSST---VGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQG

Query:  R
        R
Subjt:  R

AT3G05090.2 Transducin/WD40 repeat-like superfamily protein

1.5e-28

65.35

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Query:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSST---VGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQG
        +I+ V+K V NYVVEKMVLD PLD++  D    SG        G+G  +SGLKPWQKL+PSIEILCN+QVLSPDMSLATVR Y+WKKPEDL+LNYRV   
Subjt:  QIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSST---VGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQG

Query:  R
        R
Subjt:  R

Sequences

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CDS sequence

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ATGCTTTTGCAAATTGTTATTGTTAACAAGTTTGTTGTAAATTATGTCGTAGAGAAGATGGTTCTTGACAAGCCATTGGATAATGTAAATCCGGACGTTCCTTTTGGTTC
TGGACTCTCTTCAACAGTTGGAGATGGATCATTTCGGTCTGGATTAAAGCCTTGGCAAAAACTTAAACCTTCTATAGAAATCTTATGCAATAATCAGGTCTTGTCCCCTG
ATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCCGAGGATTTGGTTCTCAATTACAGAGTGCTTCAAGGCAGGTGA

mRNA sequence

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Protein sequence

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MLLQIVIVNKFVVNYVVEKMVLDKPLDNVNPDVPFGSGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVLQGR

Spg003575 (gene) of Sponge gourd (cylindrica) v1 genome