; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003611 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003611
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibosomal protein L18ae family
Genome locationscaffold4:49037767..49045473
RNA-Seq ExpressionSpg003611
SyntenySpg003611
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141063.1 uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus]6.6e-5990Show/hide
Query:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR
        + K++QTVQLVKSVSDKHLDLLRPSARICSIFKGQGK A DHIR+KYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FPL+WYYATILYFWNARR
Subjt:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]7.8e-6092.31Show/hide
Query:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR
        + K++QTVQLVKSVSDKHLDLLRPSARICSIFKGQGK A DHIR+KYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FPLMWYYATILYFWNARR
Subjt:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS+ILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

XP_011648592.1 uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]3.9e-5986.76Show/hide
Query:  GYCKLEDAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILY
        G+    + K++QTVQLVKSVSDKHLDLLRPSARICSIFKGQGK A DHIR+KYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FPL+WYYATILY
Subjt:  GYCKLEDAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILY

Query:  FWNARRDPRERAGLAASAIAALACSVILLVVVAVLL
        FWNARRDPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  FWNARRDPRERAGLAASAIAALACSVILLVVVAVLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]2.3e-5992.37Show/hide
Query:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR
        +AKI+ TVQLVKSVSD+HLDLLRPSARICSIFKGQGK ASDHIR+KYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFP+MWYYATILYFWN+RR
Subjt:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLLL
        DPRERAGLAAS+IAALACSVILLVVVAV LL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLLL

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]7.0e-6194.62Show/hide
Query:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR
        + KI+QTVQLVKSVSDKHLDLLRPSARICSIFKGQGK ASDHIR+KYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FPLMWYYATILYFWNARR
Subjt:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS+ILLVVVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein1.9e-5986.76Show/hide
Query:  GYCKLEDAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILY
        G+    + K++QTVQLVKSVSDKHLDLLRPSARICSIFKGQGK A DHIR+KYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FPL+WYYATILY
Subjt:  GYCKLEDAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILY

Query:  FWNARRDPRERAGLAASAIAALACSVILLVVVAVLL
        FWNARRDPRERAGLAASAIAALACS++LL+VVAVLL
Subjt:  FWNARRDPRERAGLAASAIAALACSVILLVVVAVLL

A0A1S3CAZ9 uncharacterized protein LOC1034986583.8e-6092.31Show/hide
Query:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR
        + K++QTVQLVKSVSDKHLDLLRPSARICSIFKGQGK A DHIR+KYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FPLMWYYATILYFWNARR
Subjt:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS+ILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-13.8e-6092.31Show/hide
Query:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR
        + K++QTVQLVKSVSDKHLDLLRPSARICSIFKGQGK A DHIR+KYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FPLMWYYATILYFWNARR
Subjt:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLL
        DPRERAGLAASAIAALACS+ILL+VVAVLL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLL

A0A6J1G4J6 uncharacterized protein LOC1114506861.1e-5992.37Show/hide
Query:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR
        +AKI+ TVQLVKSVSD+HLDLLRPSARICSIFKGQGK ASDHIR+KYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFP+MWYYATILYFWN+RR
Subjt:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLLL
        DPRERAGLAAS+IAALACSVILLVVVAV LL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLLL

A0A6J1KAT7 uncharacterized protein LOC1114937953.2e-5991.6Show/hide
Query:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR
        +AKI+ TVQLVKSVSD+HLDLLRP+ARICSIFKGQGK ASDHIR+KYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFP+MWYYATILYFWN+RR
Subjt:  DAKIEQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARR

Query:  DPRERAGLAASAIAALACSVILLVVVAVLLL
        DPRERAGLAAS+IAALACSVILLVVVAV LL
Subjt:  DPRERAGLAASAIAALACSVILLVVVAVLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family6.9e-2265.52Show/hide
Query:  KYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVILLVVVAVLL
        KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAASAIAAL  SV L++ V VL+
Subjt:  KYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVILLVVVAVLL

AT1G54217.2 Ribosomal protein L18ae family6.9e-2265.52Show/hide
Query:  KYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVILLVVVAVLL
        KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAASAIAAL  SV L++ V VL+
Subjt:  KYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVILLVVVAVLL

AT4G26060.1 Ribosomal protein L18ae family1.0e-3360.33Show/hide
Query:  TVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRER
        + +LVKSV+DKH  L+RP A+  S  K     A    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF+FP +WYYAT+LYF N  R+DPRER
Subjt:  TVQLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRER

Query:  AGLAASAIAALACSVILLVVV
        AGLAASAI A+  S++LLV+V
Subjt:  AGLAASAIAALACSVILLVVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown5.6e-3256.67Show/hide
Query:  QLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRERAG
        +LVK ++D+H  L++ ++R  S  K     A    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAG
Subjt:  QLVKSVSDKHLDLLRPSARICSIFKGQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRERAG

Query:  LAASAIAALACSVILLVVVA
        LAASAI A+  S++LLV+ A
Subjt:  LAASAIAALACSVILLVVVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)2.9e-2868.24Show/hide
Query:  RTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVILLVVVA
        + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAGLAASAI A+  S++LLV+ A
Subjt:  RTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSVILLVVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGAATTGATGAGGACAGCGCGATACCAGCCCAAGGAGGACAGTTAGGAAACGGAATCCGGAGGGAGAACATGCTAAAGGGTCGGGCCAAAGCCGAAGGGGTCGG
GCTTTGGCCCGACCCCCTGCTAAGGCTCGGTCAGGCCGAGGCCGAGCTCTTCCGCCTCCATTCGGTCCCTGGTGCCCCCGGCTGCCTCTGTTCCACTCGGTTCCGCCCGA
ATCGCCTCCGAATTTCTAAAAACCCTAGGAGCATGAGCAGGTATTTAAACCCCTCTTCATATGATGAAGAGGAGATCCGGAACTCGATTTTCTACTCTCTCCTCCTTCCG
CTTTCTGACTTAAGCATCGGAGGCAGTGTGGCAAGCACCACACCGGTGTGTAATTCTGACCACTCCGGTATTCAAGGACTAAGCAGGACAGCGCAGTACCTACCCGAAGA
CACGATCGAGAAGCGGATCCCGAAGGAGAGGCAAAGCAAAGGGGTTTGGCCAAGCTTGGCCCAACCCCCCGTGGGCCATGGTCAACCCACATGCGTGGCCCGAGTCTCTC
CCTCTCCGCTTGCATCGGAGGCGGTGTGGCAAGCACCACACCAGTGTGCAGATTTAGCTTGTCTTGCAGGTCATGTCTTCCCCTCAAACAAATTCATTGTTGGTGTCTCA
GCGTGTTCGTCTGTTCATTTCTCCGCCAATTCCGTCGTCCCTGATCCGTGGAAAGCGAGAGAAATTGCAGTTTCAGTCGCTTCTTCTACTCACCTCTTCATCAATTCGGT
ACTTTGTTCTTCGATTTCTCTGCTCTTTTGCTCGTTAATTGATGGATATTGGGGAACTGTCCCTTTGTTTGTGAACGATGAGGAGACCGATGGTGCGGAAATTGGATACT
GCAAACTTGAAGATGCAAAAATCGAGCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAA
GGCCAAGGAAAAGTTGCTTCAGACCATATAAGGACCAAGTATACACTTCTCAGAGATGTTGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCATGTTTTGGCTG
TGGCATTGGATGGTTTTCTTTCCTCCTCGGGTTCTTGTTCCCACTAATGTGGTACTATGCCACAATTCTCTACTTCTGGAACGCCCGCAGAGATCCAAGGGAACGAGCTG
GATTAGCTGCGTCTGCCATTGCTGCCCTTGCATGCTCGGTCATCTTGTTGGTCGTGGTAGCTGTTCTCCTATTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGAATTGATGAGGACAGCGCGATACCAGCCCAAGGAGGACAGTTAGGAAACGGAATCCGGAGGGAGAACATGCTAAAGGGTCGGGCCAAAGCCGAAGGGGTCGG
GCTTTGGCCCGACCCCCTGCTAAGGCTCGGTCAGGCCGAGGCCGAGCTCTTCCGCCTCCATTCGGTCCCTGGTGCCCCCGGCTGCCTCTGTTCCACTCGGTTCCGCCCGA
ATCGCCTCCGAATTTCTAAAAACCCTAGGAGCATGAGCAGGTATTTAAACCCCTCTTCATATGATGAAGAGGAGATCCGGAACTCGATTTTCTACTCTCTCCTCCTTCCG
CTTTCTGACTTAAGCATCGGAGGCAGTGTGGCAAGCACCACACCGGTGTGTAATTCTGACCACTCCGGTATTCAAGGACTAAGCAGGACAGCGCAGTACCTACCCGAAGA
CACGATCGAGAAGCGGATCCCGAAGGAGAGGCAAAGCAAAGGGGTTTGGCCAAGCTTGGCCCAACCCCCCGTGGGCCATGGTCAACCCACATGCGTGGCCCGAGTCTCTC
CCTCTCCGCTTGCATCGGAGGCGGTGTGGCAAGCACCACACCAGTGTGCAGATTTAGCTTGTCTTGCAGGTCATGTCTTCCCCTCAAACAAATTCATTGTTGGTGTCTCA
GCGTGTTCGTCTGTTCATTTCTCCGCCAATTCCGTCGTCCCTGATCCGTGGAAAGCGAGAGAAATTGCAGTTTCAGTCGCTTCTTCTACTCACCTCTTCATCAATTCGGT
ACTTTGTTCTTCGATTTCTCTGCTCTTTTGCTCGTTAATTGATGGATATTGGGGAACTGTCCCTTTGTTTGTGAACGATGAGGAGACCGATGGTGCGGAAATTGGATACT
GCAAACTTGAAGATGCAAAAATCGAGCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAA
GGCCAAGGAAAAGTTGCTTCAGACCATATAAGGACCAAGTATACACTTCTCAGAGATGTTGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCATGTTTTGGCTG
TGGCATTGGATGGTTTTCTTTCCTCCTCGGGTTCTTGTTCCCACTAATGTGGTACTATGCCACAATTCTCTACTTCTGGAACGCCCGCAGAGATCCAAGGGAACGAGCTG
GATTAGCTGCGTCTGCCATTGCTGCCCTTGCATGCTCGGTCATCTTGTTGGTCGTGGTAGCTGTTCTCCTATTATAG
Protein sequenceShow/hide protein sequence
MQGIDEDSAIPAQGGQLGNGIRRENMLKGRAKAEGVGLWPDPLLRLGQAEAELFRLHSVPGAPGCLCSTRFRPNRLRISKNPRSMSRYLNPSSYDEEEIRNSIFYSLLLP
LSDLSIGGSVASTTPVCNSDHSGIQGLSRTAQYLPEDTIEKRIPKERQSKGVWPSLAQPPVGHGQPTCVARVSPSPLASEAVWQAPHQCADLACLAGHVFPSNKFIVGVS
ACSSVHFSANSVVPDPWKAREIAVSVASSTHLFINSVLCSSISLLFCSLIDGYWGTVPLFVNDEETDGAEIGYCKLEDAKIEQTVQLVKSVSDKHLDLLRPSARICSIFK
GQGKVASDHIRTKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSVILLVVVAVLLL