CuGenDBv2

Gene ID	Spg003624
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II PsbX
Genome location	scaffold4:49082919..49083290
RNA-Seq Expression	Spg003624
Synteny	Spg003624
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061475.1 membrane family protein [Cucumis melo var. makuwa]

1.2e-45

91.06

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

XP_011648590.1 uncharacterized protein LOC105434533 [Cucumis sativus]

1.0e-44

90.24

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

2.7e-45

90.24

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMAMPIT ATQKRAR ++ FAK  LPLRPSNKPTA+S S AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGA+IGV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

XP_022999231.1 uncharacterized protein LOC111493667 [Cucurbita maxima]

1.0e-44

89.43

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMAMPIT ATQKRAR ++ FAK  LPLRPSNKPTA+S S AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVV AILGA+IGV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

9.1e-46

91.87

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP A+S SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

4.9e-45

90.24

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

A0A1S3CAS0 uncharacterized protein LOC103498700

6.4e-45

89.43

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SM MPIT A QKR R +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

A0A5A7V6L0 Membrane family protein

5.8e-46

91.06

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+SMAMPIT A QKRAR +E FAKP LPLRPSNKP+ +S SSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGAVIGVANFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

1.3e-45

90.24

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMAMPIT ATQKRAR ++ FAK  LPLRPSNKPTA+S S AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVVTAILGA+IGV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

4.9e-45

89.43

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSAVSMAMPIT ATQKRAR ++ FAK  LPLRPSNKPTA+S S AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        GVVV AILGA+IGV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

2.2e-26

57.72

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Query:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG
        MASTSA+S+  P+    Q R   S  F KP LPL+PS    A    + + QV+A   +KA+ G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+G
Subjt:  MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAG

Query:  GVVVTAILGAVIGVANFDPVKRT
        G+V+T I+G V+GV+NFDPVKRT
Subjt:  GVVVTAILGAVIGVANFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACTTCCGCAGTTTCAATGGCGATGCCAATTACTGGTGCGACTCAGAAGAGAGCGAGGGGCTCCGAAGTCTTTGCCAAGCCATTATTGCCTTTGAGGCCTTC
CAACAAGCCAACTGCTGCATCAAAATCCAGCGCCAAGTTCCAGGTGCGGGCTTCTTTGAAGGAGAAGGCGGTTGCTGGACTCGCTGCAACTGCACTGACGGCCTCCATGG
TGCTTCCTGAGGTGGCTGAAGCTGCAGGGCCTGGAGTTAGTCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCCATCTTGGGTGCA
GTTATCGGCGTCGCAAATTTCGATCCCGTCAAGCGGACCTGA

mRNA sequence

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Protein sequence

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MASTSAVSMAMPITGATQKRARGSEVFAKPLLPLRPSNKPTAASKSSAKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGA
VIGVANFDPVKRT

Spg003624 (gene) of Sponge gourd (cylindrica) v1 genome