; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003670 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003670
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationscaffold4:47816640..47817937
RNA-Seq ExpressionSpg003670
SyntenySpg003670
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586405.1 hypothetical protein SDJN03_19138, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6994.12Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+NKTEVLAGDWYC+CGAHNYA+R SCYRCN+YKS DIGALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRDFG
        HNYASRMECYKCKTPRDFG
Subjt:  HNYASRMECYKCKTPRDFG

XP_008457786.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo]1.1e-6487.5Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYN------KTEVLAGDWYCNCGAHNYANRSSCYRCNS--YKSVDIGALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY +YN        EVLAGDWYCNCGAHNYA+RSSCYRCNS  YKS+DIGALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYN------KTEVLAGDWYCNCGAHNYANRSSCYRCNS--YKSVDIGALPGWKSGDW

Query:  ICNRIGCETHNYASRMECYKCKTPRDFG
        IC+RIGCETHNYASRMECYKCKTPRDFG
Subjt:  ICNRIGCETHNYASRMECYKCKTPRDFG

XP_022937997.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita moschata]1.0e-6893.28Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+NKTEVLAGDWYC+CGAHNYA+RSSCYRCN+YKS DI ALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRDFG
        HNYASRMECYKCKTPR+FG
Subjt:  HNYASRMECYKCKTPRDFG

XP_022966014.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]8.2e-7195.8Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+NKTEVLAGDWYC+CGAHNYA+RSSCYRCN+YKS DIGALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRDFG
        HNYASRMECYKCKTPRDFG
Subjt:  HNYASRMECYKCKTPRDFG

XP_023538268.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]2.4e-7094.96Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+NKTEVLAGDWYC+CGAHNYA+RSSCYRCN+YKS DIGALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRDFG
        HNYASRMECYKCKTPRDFG
Subjt:  HNYASRMECYKCKTPRDFG

TrEMBL top hitse value%identityAlignment
A0A0A0LIX1 Uncharacterized protein8.5e-6682.01Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYN------KTEVLAGDWYCNCGAHNYANRSSCYRCNS--YKSVDIGALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY +YN        EVLAGDWYCNCGAHNYA+RSSCY+CNS  YKS+DIGALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYN------KTEVLAGDWYCNCGAHNYANRSSCYRCNS--YKSVDIGALPGWKSGDW

Query:  ICNRIGCETHNYASRMECYKCKTPRDFGKKIRFWRLYKY
        IC+RIGCETHNYASRMECYKCK PR FGK I+F  L+ +
Subjt:  ICNRIGCETHNYASRMECYKCKTPRDFGKKIRFWRLYKY

A0A1S3C6B6 uncharacterized RNA-binding protein C17H9.04c5.5e-6587.5Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYN------KTEVLAGDWYCNCGAHNYANRSSCYRCNS--YKSVDIGALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY +YN        EVLAGDWYCNCGAHNYA+RSSCYRCNS  YKS+DIGALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY-EYN------KTEVLAGDWYCNCGAHNYANRSSCYRCNS--YKSVDIGALPGWKSGDW

Query:  ICNRIGCETHNYASRMECYKCKTPRDFG
        IC+RIGCETHNYASRMECYKCKTPRDFG
Subjt:  ICNRIGCETHNYASRMECYKCKTPRDFG

A0A6J1CPG4 uncharacterized RNA-binding protein C17H9.04c-like4.7e-6487.2Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTE---VLAGDWYCNCGAHNYANRSSCYRCNS--YKSVD-IGALPGWKSGDWICN
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEY+KT+   +LAGDWYCNCGAHNYA+RS+CYRCNS  +K+VD IGALPGWKSGDWIC 
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTE---VLAGDWYCNCGAHNYANRSSCYRCNS--YKSVD-IGALPGWKSGDWICN

Query:  RIGCETHNYASRMECYKCKTPRDFG
        RIGCE HNYASRMECYKC TPRDFG
Subjt:  RIGCETHNYASRMECYKCKTPRDFG

A0A6J1FCS1 zinc finger Ran-binding domain-containing protein 2-like4.8e-6993.28Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE+NKTEVLAGDWYC+CGAHNYA+RSSCYRCN+YKS DI ALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRDFG
        HNYASRMECYKCKTPR+FG
Subjt:  HNYASRMECYKCKTPRDFG

A0A6J1HSH3 zinc finger Ran-binding domain-containing protein 2-like3.9e-7195.8Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYE+NKTEVLAGDWYC+CGAHNYA+RSSCYRCN+YKS DIGALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRDFG
        HNYASRMECYKCKTPRDFG
Subjt:  HNYASRMECYKCKTPRDFG

SwissProt top hitse value%identityAlignment
O95218 Zinc finger Ran-binding domain-containing protein 22.3e-0734.65Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++    A DW C  C   N+A RS C  CN+ K   +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS

Query:  G
        G
Subjt:  G

Q19QU3 Zinc finger Ran-binding domain-containing protein 22.3e-0734.65Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++    A DW C  C   N+A RS C  CN+ K   +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS

Query:  G
        G
Subjt:  G

Q5R580 Zinc finger Ran-binding domain-containing protein 22.3e-0734.65Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++    A DW C  C   N+A RS C  CN+ K   +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS

Query:  G
        G
Subjt:  G

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 24.6e-0835.64Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++    A DW C  CG  N+A RS C  CN+ K   +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS

Query:  G
        G
Subjt:  G

Q9R020 Zinc finger Ran-binding domain-containing protein 22.3e-0734.65Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +   T  E ++    A DW C  C   N+A RS C  CN+ K   +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPD--PTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKS

Query:  G
        G
Subjt:  G

Arabidopsis top hitse value%identityAlignment
AT1G48570.1 zinc finger (Ran-binding) family protein9.1e-1231.82Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCETHNYASR
        GDW+C  C  +NF + ++C +C   K  GP  T+   N  E+  GDW C  CG  N+A+   C  C   +   +      + GDW C    C+  N+   
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYC-NCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCETHNYASR

Query:  MECYKCKTPR
          C KC+  R
Subjt:  MECYKCKTPR

AT2G17975.1 zinc finger (Ran-binding) family protein1.3e-1030.07Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDW---YCNCGAHNYANRSSCYRCNSYKSVDIG----------------
        ++  W  GDW+C  C   N+  R  C++C       P     +   +E LA +W     N G  +   +S+ Y   S+  + +G                
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDW---YCNCGAHNYANRSSCYRCNSYKSVDIG----------------

Query:  --ALPG-----WKSGDWICNRIGCETHNYASRMECYKCKTPRD
          AL G     W+ GDW+C    C+ HNYASR EC +CKT RD
Subjt:  --ALPG-----WKSGDWICNRIGCETHNYASRMECYKCKTPRD

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.7e-5058.09Show/hide
Query:  MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYC---NCGAHNYANRSSCYRCN----------------SYKSVDIGAL
        M+W+GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D +TY YN+TEV+AGDWYC   NCG+HNYA+R+SCYRC                 +Y +      
Subjt:  MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYC---NCGAHNYANRSSCYRCN----------------SYKSVDIGAL

Query:  PGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFG
        PGWK+GDW+C R+GC  HNYASR EC+KCKT RD+G
Subjt:  PGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein6.1e-3238.75Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYNK-TEVLAGDWYC---NCGAHNYANRSSCYRCNSYK--------------
        GDW C  C H+NF++R++CQRCG             +  +GG   + + +   ++V  GDWYC   NCG HN+A+RS+C++C ++K              
Subjt:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPTTYEYNK-TEVLAGDWYC---NCGAHNYANRSSCYRCNSYK--------------

Query:  ----SVDI--------GALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGKKIRF
              DI        G    WKSGDWIC RIGC  HN+ASRMEC++C  PRDF  +  F
Subjt:  ----SVDI--------GALPGWKSGDWICNRIGCETHNYASRMECYKCKTPRDFGKKIRF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein1.1e-2837.11Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPKYGG------------PDPTTYEYNK-TEVLAGDWYCN---CGAHNYANRSSCYRCNSYK---------------
        GDW C +C H+NF++R++CQRC  P+ GG            P  +++ +N   +V  GDWYCN   CG HN+ANRSSC++C + K               
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPKYGG------------PDPTTYEYNK-TEVLAGDWYCN---CGAHNYANRSSCYRCNSYK---------------

Query:  SVDIGALPG------------------WKSGDWICNRIGCETHNYASRMECYKCKTPRD
         +++G   G                  WKSGDWIC R GC  HN+ASR EC++C  P++
Subjt:  SVDIGALPG------------------WKSGDWICNRIGCETHNYASRMECYKCKTPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATGAATTGGTCAGGAGGTGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGAGAAGCTTGTCAACGATGTGGGTACCCGAAATATGGTGGTCC
AGACCCGACAACCTACGAGTACAATAAGACAGAAGTCTTGGCAGGAGATTGGTATTGCAATTGTGGAGCTCACAACTACGCCAATAGGTCAAGTTGCTATAGATGTAATT
CATATAAGAGTGTCGATATTGGTGCCTTGCCTGGTTGGAAATCTGGAGATTGGATCTGCAATAGAATAGGATGTGAAACGCACAATTATGCTAGCAGGATGGAATGCTAC
AAATGCAAAACTCCAAGGGATTTTGGTAAGAAGATCAGATTTTGGAGACTTTATAAATATACGATTGTGTGGAGCTGTTTGAAGAAACTAATTTTTGAAGAACTCTTAGT
GATGCTAATACTTGGCCAACTTACAAAGCTTCTTGGCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATATGAATTGGTCAGGAGGTGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGAGAAGCTTGTCAACGATGTGGGTACCCGAAATATGGTGGTCC
AGACCCGACAACCTACGAGTACAATAAGACAGAAGTCTTGGCAGGAGATTGGTATTGCAATTGTGGAGCTCACAACTACGCCAATAGGTCAAGTTGCTATAGATGTAATT
CATATAAGAGTGTCGATATTGGTGCCTTGCCTGGTTGGAAATCTGGAGATTGGATCTGCAATAGAATAGGATGTGAAACGCACAATTATGCTAGCAGGATGGAATGCTAC
AAATGCAAAACTCCAAGGGATTTTGGTAAGAAGATCAGATTTTGGAGACTTTATAAATATACGATTGTGTGGAGCTGTTTGAAGAAACTAATTTTTGAAGAACTCTTAGT
GATGCTAATACTTGGCCAACTTACAAAGCTTCTTGGCATCTGA
Protein sequenceShow/hide protein sequence
MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYNKTEVLAGDWYCNCGAHNYANRSSCYRCNSYKSVDIGALPGWKSGDWICNRIGCETHNYASRMECY
KCKTPRDFGKKIRFWRLYKYTIVWSCLKKLIFEELLVMLILGQLTKLLGI