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Spg003707 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003707
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein L27-like
Genome locationscaffold4:44807573..44809943
RNA-Seq ExpressionSpg003707
SyntenySpg003707
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001684 - Ribosomal protein L27
IPR018261 - Ribosomal protein L27, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583414.1 hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia]5.1e-7594.59Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYA+T  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT

XP_016901663.1 PREDICTED: 50S ribosomal protein L27-like [Cucumis melo]3.9e-7594.56Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVH++PK+GHVLHPVYATTSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTT

XP_022964702.1 uncharacterized protein LOC111464705 [Cucurbita moschata]1.8e-7595.27Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYATT  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT

XP_022970580.1 uncharacterized protein LOC111469515 [Cucurbita maxima]7.9e-7696.58Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYATT  SPELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT

XP_038877023.1 50S ribosomal protein L27-like [Benincasa hispida]3.5e-7694.59Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVT VPVYSSFSDGAA GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT
        FALKEGCV FEKHKLSGRKWVH++PKEGHVLHP+YATTSTSPELKTTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT

TrEMBL top hitse value%identityAlignment
A0A1S4E0A6 50S ribosomal protein L27-like1.9e-7594.56Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVH++PK+GHVLHPVYATTSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTT

A0A5A7TXR2 50S ribosomal protein L27-like1.9e-7594.56Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVH++PK+GHVLHPVYATTSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTT

A0A6J1DS22 uncharacterized protein LOC1110238671.0e-7393.88Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIAT FCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTT
        FALKEGC+KFEKHKLSGRKWVH++PKEGHVLHPVYA  ST+ ELKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTT

A0A6J1HP14 uncharacterized protein LOC1114647058.5e-7695.27Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYATT  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT

A0A6J1I390 uncharacterized protein LOC1114695153.8e-7696.58Show/hide
Query:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYATT  SPELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT

SwissProt top hitse value%identityAlignment
A9IM57 50S ribosomal protein L271.7e-2568.67Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFAL EG V F++ K   R +V ++P
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVP

B4RZH4 50S ribosomal protein L276.6e-2569.51Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIV
        A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFALK+G V+F+      RK+V IV
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIV

Q48NL3 50S ribosomal protein L273.3e-2464.29Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPK
        A KK  GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G  VG+GKDHTLFA  EG +KF+     GR++V IVPK
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPK

Q6G0T7 50S ribosomal protein L271.9e-2467.07Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIV
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VGIGKDHTLFAL  G V F++ K + R +V +V
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIV

Q6G507 50S ribosomal protein L272.3e-2567.47Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFAL +G V F++ K + R +V ++P
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVP

Arabidopsis top hitse value%identityAlignment
AT2G16930.1 Ribosomal protein L27 family protein1.9e-5667.55Show/hide
Query:  LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A + C+R+++++L+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTTTA
        LFALKEG V+FEK K++GRKW+H+ P  GHVLHP+Y   + +   K  T +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTTTA

AT2G16930.2 Ribosomal protein L27 family protein1.9e-5667.55Show/hide
Query:  LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A + C+R+++++L+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTTTA
        LFALKEG V+FEK K++GRKW+H+ P  GHVLHP+Y   + +   K  T +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTTTA

AT2G16930.3 Ribosomal protein L27 family protein1.9e-5667.55Show/hide
Query:  LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A + C+R+++++L+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTTTA
        LFALKEG V+FEK K++GRKW+H+ P  GHVLHP+Y   + +   K  T +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTTTA

AT5G15220.1 Ribosomal protein L27 family protein1.0e-5770.2Show/hide
Query:  LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A + C+R+++++L+T VP Y  SS SDG++ GLSL+F+RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVY--ATTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+H+ P  GHVLHP+Y  A  + S +LKT +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVY--ATTSTSPELKTTT

AT5G40950.1 ribosomal protein large subunit 271.0e-2060Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPKE
        A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+L +G VKFEK     RK + + P+E
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTT
ATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTC
CTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGAAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTC
GAAAAGCACAAGCTGAGTGGACGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAAC
GACAACGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTT
ATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTC
CTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGAAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTC
GAAAAGCACAAGCTGAGTGGACGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAAC
GACAACGGCATGA
Protein sequenceShow/hide protein sequence
MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKF
EKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTTTA