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Spg003733 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003733
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:47300649..47303075
RNA-Seq ExpressionSpg003733
SyntenySpg003733
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.1e-1141.3Show/hide
Query:  PPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS-PKVIVESDAYQVVRLLSSNEQDLT
        PP   WKLN DASWSEE+++GG+GW+L    G  ++ G   I ++ E+  LE++ I  GL  I   S   + +ESD+ +V+RL+   + DLT
Subjt:  PPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS-PKVIVESDAYQVVRLLSSNEQDLT
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.4e-1137.38Show/hide
Query:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI-VESDAYQVVRLLSSNEQDLTELSLLIN
        PP    WKLN +A+W  +   GG+GW+LR   G  +    R I  +  + +LEV+AICEGL  I  +  + I +ESD+ + + LL    QD TE+  L+ 
Subjt:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI-VESDAYQVVRLLSSNEQDLTELSLLIN

Query:  EAHALMR
        E   +M+
Subjt:  EAHALMR
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.9e-0940Show/hide
Query:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI-VESDAYQVVRLL
        PP    WKLN DA+W  +    G+GW+LR   G  +  G R I  +  + +LEV+AICEGL  I  +  + I +ESD+ + + LL
Subjt:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI-VESDAYQVVRLL
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.8e-1239.22Show/hide
Query:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS--PKVIVESDAYQVVRLLSSNEQDLTELSLLI
        PPP  IW LN DASWS+    GG+GW++R W+G  ++ G R +     VK LE  AI EGL  + N      + +E+D+ +V  LL+   +DLT+   ++
Subjt:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS--PKVIVESDAYQVVRLLSSNEQDLTELSLLI

Query:  NE
         E
Subjt:  NE
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]6.9e-1135.96Show/hide
Query:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI---------VESDAYQVVRLLSSNEQDL
        PP    WKLN DA+W  +   GG+GW+LR   G  +    R I  +  + +LEV+AICEGL  I  +  + I         +ESD+ + + LL    QD 
Subjt:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI---------VESDAYQVVRLLSSNEQDL

Query:  TELSLLINEAHALM
        TE+  L+ E   +M
Subjt:  TELSLLINEAHALM
TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134126.7e-1237.38Show/hide
Query:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI-VESDAYQVVRLLSSNEQDLTELSLLIN
        PP    WKLN +A+W  +   GG+GW+LR   G  +    R I  +  + +LEV+AICEGL  I  +  + I +ESD+ + + LL    QD TE+  L+ 
Subjt:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI-VESDAYQVVRLLSSNEQDLTELSLLIN

Query:  EAHALMR
        E   +M+
Subjt:  EAHALMR
A0A6J1CQG0 uncharacterized protein LOC1110132161.5e-1141.3Show/hide
Query:  PPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS-PKVIVESDAYQVVRLLSSNEQDLT
        PP   WKLN DASWSEE+++GG+GW+L    G  ++ G   I ++ E+  LE++ I  GL  I   S   + +ESD+ +V+RL+   + DLT
Subjt:  PPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS-PKVIVESDAYQVVRLLSSNEQDLT
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.4e-0940Show/hide
Query:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI-VESDAYQVVRLL
        PP    WKLN DA+W  +    G+GW+LR   G  +  G R I  +  + +LEV+AICEGL  I  +  + I +ESD+ + + LL
Subjt:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI-VESDAYQVVRLL
A0A6J1DNV9 uncharacterized protein LOC1110224032.3e-1239.22Show/hide
Query:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS--PKVIVESDAYQVVRLLSSNEQDLTELSLLI
        PPP  IW LN DASWS+    GG+GW++R W+G  ++ G R +     VK LE  AI EGL  + N      + +E+D+ +V  LL+   +DLT+   ++
Subjt:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS--PKVIVESDAYQVVRLLSSNEQDLTELSLLI

Query:  NE
         E
Subjt:  NE
A0A6J1DSV1 uncharacterized protein LOC1110236083.3e-1135.96Show/hide
Query:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI---------VESDAYQVVRLLSSNEQDL
        PP    WKLN DA+W  +   GG+GW+LR   G  +    R I  +  + +LEV+AICEGL  I  +  + I         +ESD+ + + LL    QD 
Subjt:  PPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDSPKVI---------VESDAYQVVRLLSSNEQDL

Query:  TELSLLINEAHALM
        TE+  L+ E   +M
Subjt:  TELSLLINEAHALM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.2e-0625.95Show/hide
Query:  EKKKRRVMKRKWQNLSKLQMIAYVALDHDGPSLLRGNKNKIPPPKGIW-KLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAIC
        E   + V++R   +L + ++          P + R +  +  PP   W K N DA+W+ + +  G+GWVLR+  G    +G RA+ +   V   E+ A+ 
Subjt:  EKKKRRVMKRKWQNLSKLQMIAYVALDHDGPSLLRGNKNKIPPPKGIW-KLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAIC

Query:  EGLCKIPN-DSPKVIVESDAYQVVRLLSSNE
          +  +       VI ESD+  ++ +L+++E
Subjt:  EGLCKIPN-DSPKVIVESDAYQVVRLLSSNE
AT5G19270.1 unknown protein8.7e-0438.18Show/hide
Query:  LDHDGPSLLRGNK---NKIPPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPL
        +D  G   +RG     N  PP  GI K N +A W     M GV W+ R  NG  L
Subjt:  LDHDGPSLLRGNK---NKIPPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAAGAAGAGAAGGGTAATGAAGCGGAAATGGCAAAATCTTTCGAAACTTCAAATGATTGCTTATGTAGCACTCGATCATGATGGTCCATCCTTATTAAGAGG
GAACAAGAATAAGATCCCACCACCGAAAGGAATATGGAAATTAAACTGTGATGCATCATGGTCTGAGGAGAAGCAGATGGGTGGTGTGGGATGGGTCCTTCGCCACTGGA
ATGGCACCCCTTTGATGGTCGGATTCAGAGCAATCAATCAACAATGGGAGGTGAAATGGCTGGAAGTAGTAGCGATTTGCGAAGGTCTGTGCAAGATCCCGAACGATTCC
CCTAAAGTGATAGTGGAGTCAGATGCATACCAAGTGGTTCGACTTCTATCCAGCAACGAACAAGATCTCACAGAACTATCCCTTCTCATAAATGAAGCTCACGCCCTAAT
GAGAATGAAAAATATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAAGAAGAGAAGGGTAATGAAGCGGAAATGGCAAAATCTTTCGAAACTTCAAATGATTGCTTATGTAGCACTCGATCATGATGGTCCATCCTTATTAAGAGG
GAACAAGAATAAGATCCCACCACCGAAAGGAATATGGAAATTAAACTGTGATGCATCATGGTCTGAGGAGAAGCAGATGGGTGGTGTGGGATGGGTCCTTCGCCACTGGA
ATGGCACCCCTTTGATGGTCGGATTCAGAGCAATCAATCAACAATGGGAGGTGAAATGGCTGGAAGTAGTAGCGATTTGCGAAGGTCTGTGCAAGATCCCGAACGATTCC
CCTAAAGTGATAGTGGAGTCAGATGCATACCAAGTGGTTCGACTTCTATCCAGCAACGAACAAGATCTCACAGAACTATCCCTTCTCATAAATGAAGCTCACGCCCTAAT
GAGAATGAAAAATATATAA
Protein sequenceShow/hide protein sequence
MEKKKRRVMKRKWQNLSKLQMIAYVALDHDGPSLLRGNKNKIPPPKGIWKLNCDASWSEEKQMGGVGWVLRHWNGTPLMVGFRAINQQWEVKWLEVVAICEGLCKIPNDS
PKVIVESDAYQVVRLLSSNEQDLTELSLLINEAHALMRMKNI