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Spg003748 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003748
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:46750056..46752800
RNA-Seq ExpressionSpg003748
SyntenySpg003748
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274760.1 unnamed protein product [Prunus armeniaca]9.5e-1333.55Show/hide
Query:  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSD
        P+P  W  P     K+N DA+WS ++  GG+GW+ RDS   L+ AG +      S   +EL A+   L    N        IIVE+DS + I +LN ++ 
Subjt:  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSD

Query:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHI
         +S+   +  ++  + + +  +SF F+PRS N  AHS+A FA      G+H+
Subjt:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHI

CAB4274761.1 unnamed protein product [Prunus armeniaca]9.5e-1333.55Show/hide
Query:  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSD
        P+P  W  P     K+N DA+WS ++  GG+GW+ RDS   L+ AG +      S   +EL A+   L    N        IIVE+DS + I +LN ++ 
Subjt:  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSD

Query:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHI
         +S+   +  ++  + + +  +SF F+PRS N  AHS+A FA      G+H+
Subjt:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.6e-1233.8Show/hide
Query:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEA
        W PP  ++WK+N++A+W  +   GG+GWI RD    +I A  + +    +I  LE+ A+  GLR +     RP   I +E+DS EAI +L+ Q  D +E 
Subjt:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEA

Query:  SVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSL
          L   +  +   +  +S     R  N  AH LAR A++  L
Subjt:  SVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.8e-1234.78Show/hide
Query:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLN-NMQRPFPQIIVEADSSEAIAILNHQSDDNSE
        W PP    W +N+DASWS+    GG+GWI R     ++ AG + V    ++K LE  A+  GLRNL N  + RP   + +E DS+E  ++LN + +D ++
Subjt:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLN-NMQRPFPQIIVEADSSEAIAILNHQSDDNSE

Query:  ASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFA
           +   +  +      ++F+   R TN  AHSLA+ A
Subjt:  ASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.3e-1334.01Show/hide
Query:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQ-----IIVEADSSEAIAILNHQSD
        W PP  ++WK+N+DA+W  +   GG+GWI RD    +I A  + +    +I  LE+ A+  GLR +     RP  Q     I +E+DS EAI +L+ Q  
Subjt:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQ-----IIVEADSSEAIAILNHQSD

Query:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSL
        D +E   L   +  +   +  +S     R  N  AH LAR A++  L
Subjt:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSL

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.7e-1233.8Show/hide
Query:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEA
        W PP  ++WK+N++A+W  +   GG+GWI RD    +I A  + +    +I  LE+ A+  GLR +     RP   I +E+DS EAI +L+ Q  D +E 
Subjt:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEA

Query:  SVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSL
          L   +  +   +  +S     R  N  AH LAR A++  L
Subjt:  SVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSL

A0A6J1DNV9 uncharacterized protein LOC1110224031.3e-1234.78Show/hide
Query:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLN-NMQRPFPQIIVEADSSEAIAILNHQSDDNSE
        W PP    W +N+DASWS+    GG+GWI R     ++ AG + V    ++K LE  A+  GLRNL N  + RP   + +E DS+E  ++LN + +D ++
Subjt:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLN-NMQRPFPQIIVEADSSEAIAILNHQSDDNSE

Query:  ASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFA
           +   +  +      ++F+   R TN  AHSLA+ A
Subjt:  ASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFA

A0A6J1DSV1 uncharacterized protein LOC1110236083.5e-1334.01Show/hide
Query:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQ-----IIVEADSSEAIAILNHQSD
        W PP  ++WK+N+DA+W  +   GG+GWI RD    +I A  + +    +I  LE+ A+  GLR +     RP  Q     I +E+DS EAI +L+ Q  
Subjt:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQ-----IIVEADSSEAIAILNHQSD

Query:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSL
        D +E   L   +  +   +  +S     R  N  AH LAR A++  L
Subjt:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSL

A0A6J5UE59 Reverse transcriptase domain-containing protein4.6e-1333.55Show/hide
Query:  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSD
        P+P  W  P     K+N DA+WS ++  GG+GW+ RDS   L+ AG +      S   +EL A+   L    N        IIVE+DS + I +LN ++ 
Subjt:  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSD

Query:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHI
         +S+   +  ++  + + +  +SF F+PRS N  AHS+A FA      G+H+
Subjt:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHI

A0A6J5UF50 Uncharacterized protein4.6e-1333.55Show/hide
Query:  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSD
        P+P  W  P     K+N DA+WS ++  GG+GW+ RDS   L+ AG +      S   +EL A+   L    N        IIVE+DS + I +LN ++ 
Subjt:  PSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSD

Query:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHI
         +S+   +  ++  + + +  +SF F+PRS N  AHS+A FA      G+H+
Subjt:  DNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.8e-0929.53Show/hide
Query:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQR-PFPQIIVEADSSEAIAILNHQSDDN-S
        W  P +   K N+DA+W  E    G+GWI R+ +  +++ G + + R  ++   ELEA    LR  +  M R  + +II E+D+   + +LN  SDD   
Subjt:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQR-PFPQIIVEADSSEAIAILNHQSDDN-S

Query:  EASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAV-----DPSL
               ++  +     E+ F F+PR  N  A  +AR ++     DP L
Subjt:  EASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAV-----DPSL

AT4G29090.1 Ribonuclease H-like superfamily protein1.8e-0928.48Show/hide
Query:  DSAARSKTENLPSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSS
        +S       N  S   W PP     K N+DA+W+ + +  G+GW+ R+    + + G + + +  S+   ELEAM   + +L    +  +  +I E+DS 
Subjt:  DSAARSKTENLPSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSS

Query:  EAIAILNHQSDDNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLAR
          I ILN+     S    +  ++  + SQ  E+ F F PR  N  A  +AR
Subjt:  EAIAILNHQSDDNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLAR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.9e-0526.81Show/hide
Query:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEA
        W PP  D  K N DAS  E     GLGWI R+S  ++I  G  +   R + +  E   +   ++       +   ++I E D+     ++N +S  N   
Subjt:  WIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNHQSDDNSEA

Query:  SVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAV
              +         I FSF  R  N  A  LA+ A+
Subjt:  SVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGACTCTGCTGCCCGGTCCAAGACGGAGAACCTGCCTAGTCCGAGGCCTTGGATCCCTCCCCTCTTTGATGCGTGGAAGATCAATTCCGATGCTTCTTGGTCGGA
AGAGAAGAAGCATGGTGGTTTGGGGTGGATAGCGCGCGACTCGACATGTTCTTTGATCTATGCAGGGTTCAAGCAAGTTAGCAGGAGATGGTCGATTAAGTGTTTAGAGT
TGGAGGCCATGGCAGTGGGTTTGAGGAACTTACTGAATAACATGCAGAGGCCGTTCCCCCAGATCATTGTGGAGGCGGACTCGTCTGAAGCCATCGCCATCCTTAATCAT
CAGTCTGATGACAATTCGGAAGCCAGTGTCTTGGCTTCGAACGTCGCCGTTGTTGCCAGTCAGATTGGGGAGATCTCGTTTTCGTTCAGCCCTCGATCGACTAATTTGGA
AGCGCATTCGTTGGCGCGTTTTGCCGTTGACCCCTCCCTGTCGGGGCATCATATCGTTTTTTTGGATTCTTCCAATTCGGAAGATGGTTTTTTTTGTGTTGAGGCTCTGC
CTCCCTCTTTAGACTCTTCAATTCTTAGGAAGAGTAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACGACTCTGCTGCCCGGTCCAAGACGGAGAACCTGCCTAGTCCGAGGCCTTGGATCCCTCCCCTCTTTGATGCGTGGAAGATCAATTCCGATGCTTCTTGGTCGGA
AGAGAAGAAGCATGGTGGTTTGGGGTGGATAGCGCGCGACTCGACATGTTCTTTGATCTATGCAGGGTTCAAGCAAGTTAGCAGGAGATGGTCGATTAAGTGTTTAGAGT
TGGAGGCCATGGCAGTGGGTTTGAGGAACTTACTGAATAACATGCAGAGGCCGTTCCCCCAGATCATTGTGGAGGCGGACTCGTCTGAAGCCATCGCCATCCTTAATCAT
CAGTCTGATGACAATTCGGAAGCCAGTGTCTTGGCTTCGAACGTCGCCGTTGTTGCCAGTCAGATTGGGGAGATCTCGTTTTCGTTCAGCCCTCGATCGACTAATTTGGA
AGCGCATTCGTTGGCGCGTTTTGCCGTTGACCCCTCCCTGTCGGGGCATCATATCGTTTTTTTGGATTCTTCCAATTCGGAAGATGGTTTTTTTTGTGTTGAGGCTCTGC
CTCCCTCTTTAGACTCTTCAATTCTTAGGAAGAGTAGTTAA
Protein sequenceShow/hide protein sequence
MNDSAARSKTENLPSPRPWIPPLFDAWKINSDASWSEEKKHGGLGWIARDSTCSLIYAGFKQVSRRWSIKCLELEAMAVGLRNLLNNMQRPFPQIIVEADSSEAIAILNH
QSDDNSEASVLASNVAVVASQIGEISFSFSPRSTNLEAHSLARFAVDPSLSGHHIVFLDSSNSEDGFFCVEALPPSLDSSILRKSS