; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003806 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003806
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S24
Genome locationscaffold4:45851979..45853904
RNA-Seq ExpressionSpg003806
SyntenySpg003806
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139219.1 40S ribosomal protein S24-1 [Cucumis sativus]5.1e-6287.66Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

XP_004142519.1 40S ribosomal protein S24-1 [Cucumis sativus]1.5e-6187.66Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

XP_008455742.1 PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]6.7e-6288.31Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 IIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

XP_022143165.1 40S ribosomal protein S24-1 [Momordica charantia]1.9e-6187.01Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKEKL+RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

XP_022946610.1 40S ribosomal protein S24-1 [Cucurbita moschata]1.9e-6187.01Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKEKLARIYDVKDPN+IFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

TrEMBL top hitse value%identityAlignment
A0A0A0LFK1 40S ribosomal protein S242.5e-6287.66Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

A0A0A0LYE3 40S ribosomal protein S247.2e-6287.66Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGRPNVSKAELKEKLARIYDVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

A0A1S3C1J8 40S ribosomal protein S243.2e-6288.31Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 IIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

A0A5D3D4C1 40S ribosomal protein S243.2e-6288.31Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 IIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

E5GBS0 40S ribosomal protein S243.2e-6288.31Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MADKAVTIRTRKFMTNRLLSRKQF                 IIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

SwissProt top hitse value%identityAlignment
P62847 40S ribosomal protein S241.0e-3356.94Show/hide
Query:  VTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYE
        VTIRTRKFMTNRLL RKQ                  +IDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK E
Subjt:  VTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYE

Query:  PKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        PK+RL R+GL  K + SRKQ KERKNR KK+RG  K       K
Subjt:  PKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q56JU9 40S ribosomal protein S241.0e-3357.05Show/hide
Query:  VTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYE
        VTIRTRKFMTNRLL RKQ                  +IDVLHPG+  V K E++EKLA++Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK E
Subjt:  VTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYE

Query:  PKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
        PK+RL R+GL  K + SRKQ KERKNR KK+RG  K         GKKK
Subjt:  PKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK

Q8LC83 40S ribosomal protein S24-21.3e-5577.18Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MA+KAVTIRTR FMTNRLL+RKQF                 +IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q962Q6 40S ribosomal protein S243.8e-3656.38Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        M +   TIRTRKFMTNRLL+RKQ                  + DVLHPG+P VSK E++EKLA++Y V  P+ +FVF F+T+FGGGKSTGF LIYD+++ 
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+RG KK+K   AAK
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q9SS17 40S ribosomal protein S24-12.3e-5779.87Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MA+KAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein1.6e-5879.87Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MA+KAVTIRTRKFMTNRLLSRKQF                 +IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

AT5G28060.1 Ribosomal protein S24e family protein9.0e-5777.18Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN
        MA+KAVTIRTR FMTNRLL+RKQF                 +IDVLHPGR NVSKAELKEKLAR+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VEN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVEN

Query:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  AKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAAGCTGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGAAAGCAATTCACTGTGGATTCTGGGTATATTGCTGAGTTGCTTTTGTT
TGATTCTGAGAATATCATTGATGTTCTTCACCCAGGACGACCCAATGTCTCAAAGGCTGAGCTGAAGGAGAAGTTGGCCAGAATCTATGATGTGAAAGACCCAAATGCCA
TCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACTGGGTTCGGTTTGATCTATGATTCTGTCGAGAATGCGAAGAAGTATGAACCAAAATACAGGCTA
ATCAGGAATGGACTTGACACTAAGGTAGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAATAGGGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGC
TGCCAAGGGAGGAAAGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACAAAGCTGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGAAAGCAATTCACTGTGGATTCTGGGTATATTGCTGAGTTGCTTTTGTT
TGATTCTGAGAATATCATTGATGTTCTTCACCCAGGACGACCCAATGTCTCAAAGGCTGAGCTGAAGGAGAAGTTGGCCAGAATCTATGATGTGAAAGACCCAAATGCCA
TCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACTGGGTTCGGTTTGATCTATGATTCTGTCGAGAATGCGAAGAAGTATGAACCAAAATACAGGCTA
ATCAGGAATGGACTTGACACTAAGGTAGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAATAGGGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCAGATGC
TGCCAAGGGAGGAAAGAAGAAATGA
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFTVDSGYIAELLLFDSENIIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRL
IRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK