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Spg003816 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003816
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein SHORT-ROOT 2-like
Genome locationscaffold4:46963554..46964249
RNA-Seq ExpressionSpg003816
SyntenySpg003816
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063552.1 uncharacterized protein E6C27_scaffold329G00590 [Cucumis melo var. makuwa]1.1e-6379.64Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG--------HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRH
        MDDSNEH+GNSS S+LKE+LKSSLCLSCCLRKHRNG        HHHHH HHRRMS+SSD D PGPLTRCSSAKDKSRSRE  ++K D  P+FISRLGRH
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG--------HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRH

Query:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        GRRHSASADF YDALSY+LNFDEGYDEGH DDEFPLRNFSSRLPASPPKS  +PS S  SREMITA+
Subjt:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

XP_008460859.1 PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]4.8e-6480.24Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG--------HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRH
        MDDSNEH+GNSS S+LKE+LKSSLCLSCCLRKHRNG        HHHHH HHRRMS+SSD D PGPLTRCSSAKDKSRSRE  ++K D  P+FISRLGRH
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG--------HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRH

Query:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        GRRHSASADF YDALSY+LNFDEGYDEGH DDEFPLRNFSSRLPASPPKS  SPS S  SREMITA+
Subjt:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

XP_022938304.1 uncharacterized protein LOC111444439 [Cucurbita moschata]8.2e-6482.1Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH--HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD DVP PLTRCSSAKDKSRSRESPE KTD RPHFISRLGRH RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH--HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS  +PS + TSREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

XP_023536962.1 uncharacterized protein LOC111798189 [Cucurbita pepo subsp. pepo]1.4e-6382.1Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH--HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD DVP PLTRCSSAKDKSRSRESPE K D RPHFISRLGRH RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH--HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS  +PS S TSREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

XP_038890730.1 homeobox protein MOX-2 [Benincasa hispida]1.3e-6987.04Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG---HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRHS
        MDDSNEH+GNSSPSSLKE+LKSSLCLSCCLRKHRNG   HHHHHHHHRRMS+SSD D PGPL RCSSAKDKSRSRESPE+K D RPHFISRLGRHGRRHS
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG---HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRHS

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        ASADF YDALSYALNFDEGYDEGH DD+FPLRNFSSRLPASP KS  SPS SN SREMITA+
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

TrEMBL top hitse value%identityAlignment
A0A0A0LL60 Uncharacterized protein2.6e-6381.21Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG----HHHHHHHHRR-MSVSSDSD-VPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGR
        MDDSNEH+GNSSPSSLKE+LKSSLCLSCCLRKHRNG    HHHHHHHHRR MS+SSD +  PGPL RCSSAKDKSRSRE  ++K D  P FISRLGRHGR
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG----HHHHHHHHRR-MSVSSDSD-VPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGR

Query:  RHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        RHSASADFHYDALSY+LNFDEGYDEGH DD+FPLRNFSSRLPASPPKS  SPS +  SREMITA+
Subjt:  RHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

A0A1S3CDF1 uncharacterized protein LOC1034996072.3e-6480.24Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG--------HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRH
        MDDSNEH+GNSS S+LKE+LKSSLCLSCCLRKHRNG        HHHHH HHRRMS+SSD D PGPLTRCSSAKDKSRSRE  ++K D  P+FISRLGRH
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG--------HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRH

Query:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        GRRHSASADF YDALSY+LNFDEGYDEGH DDEFPLRNFSSRLPASPPKS  SPS S  SREMITA+
Subjt:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

A0A5D3BFQ4 Uncharacterized protein5.2e-6479.64Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG--------HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRH
        MDDSNEH+GNSS S+LKE+LKSSLCLSCCLRKHRNG        HHHHH HHRRMS+SSD D PGPLTRCSSAKDKSRSRE  ++K D  P+FISRLGRH
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG--------HHHHHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRH

Query:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        GRRHSASADF YDALSY+LNFDEGYDEGH DDEFPLRNFSSRLPASPPKS  +PS S  SREMITA+
Subjt:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

A0A6J1FDP2 uncharacterized protein LOC1114444394.0e-6482.1Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH--HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD DVP PLTRCSSAKDKSRSRESPE KTD RPHFISRLGRH RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH--HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS  +PS + TSREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

A0A6J1HQB7 uncharacterized protein LOC1114657102.6e-6382.1Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH--HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD DVP PLTRCSSAKDKSRSRESPE KTD RPHFISRLG H RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH--HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS   PS S TSREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMITAY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)9.8e-0752.08Show/hide
Query:  GRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPA
        G    R S    F YD LSY+LNFD+G   GH DDEFP R++S R  A
Subjt:  GRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPA

AT5G11070.1 unknown protein1.2e-0438.96Show/hide
Query:  KDKSRSRESPEVKTDCRPH---FISRLGRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASP
        +D+ R R    +K  CR +   + + +  H    S   DF YD LSYALNF+   D   ADD+    NF++RLP SP
Subjt:  KDKSRSRESPEVKTDCRPH---FISRLGRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASP

AT5G14890.1 NHL domain-containing protein4.9e-0641.94Show/hide
Query:  FISRLGRH---------GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPA
        FI R GR+         G        F YD+ SY+LNFD+G   GH +DEFP R++S R  A
Subjt:  FISRLGRH---------GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPA

AT5G35090.1 unknown protein1.6e-1236.77Show/hide
Query:  SLKEILKSSLCLSCCLRKHRNGHHHHHHHHRRM---SVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRL----------GRHGRRHSASAD
        SL++ LKS  C++ C R     HHHH +    +    V+++     P       K    +R   +    C+   I R+          G+H RRH  +AD
Subjt:  SLKEILKSSLCLSCCLRKHRNGHHHHHHHHRRM---SVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRL----------GRHGRRHSASAD

Query:  FHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMI
        FHYD  SYALNFD+G DE    D FPLRNFS+RLP SPP S+ +   S T + ++
Subjt:  FHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNTSREMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGAAGTACCCCTGAATCCGGTTTCCTCGCACGTTTCATTTCTGGCCCTATTCTTTATCCTTTGGCATGCGGTGCCCTTTTTAGTAATTTCACCCTCCGCCCAGGG
AATATATATAAACGCCCAAACCGCTCCTTTTTCTCAGCACCCATCATTGTTATTCGATTCTCAAAATTTCTCTTACAGCGTTTTCAGTTATCATTATTCTCAAATGGACG
ATTCGAACGAACACAGGGGAAATTCCTCGCCGTCGTCTCTCAAGGAGATTCTCAAATCTTCTCTGTGTTTGTCCTGCTGCCTCCGTAAGCACCGGAACGGCCACCACCAC
CACCACCACCACCACCGGAGGATGTCGGTTTCCTCCGACAGCGATGTGCCTGGACCGCTCACGAGGTGCTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGA
GGTTAAGACCGATTGCCGTCCGCATTTCATCTCGCGACTTGGACGCCATGGACGCCGCCACTCTGCCTCGGCCGATTTCCACTACGATGCGCTCAGTTACGCGCTCAATT
TCGACGAAGGATACGATGAAGGCCATGCCGATGATGAGTTTCCGCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCGTCGCCGTCGCCTTCTCCGTCG
AATACGTCGAGGGAGATGATCACGGCGTATAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGAAGTACCCCTGAATCCGGTTTCCTCGCACGTTTCATTTCTGGCCCTATTCTTTATCCTTTGGCATGCGGTGCCCTTTTTAGTAATTTCACCCTCCGCCCAGGG
AATATATATAAACGCCCAAACCGCTCCTTTTTCTCAGCACCCATCATTGTTATTCGATTCTCAAAATTTCTCTTACAGCGTTTTCAGTTATCATTATTCTCAAATGGACG
ATTCGAACGAACACAGGGGAAATTCCTCGCCGTCGTCTCTCAAGGAGATTCTCAAATCTTCTCTGTGTTTGTCCTGCTGCCTCCGTAAGCACCGGAACGGCCACCACCAC
CACCACCACCACCACCGGAGGATGTCGGTTTCCTCCGACAGCGATGTGCCTGGACCGCTCACGAGGTGCTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTCCTGA
GGTTAAGACCGATTGCCGTCCGCATTTCATCTCGCGACTTGGACGCCATGGACGCCGCCACTCTGCCTCGGCCGATTTCCACTACGATGCGCTCAGTTACGCGCTCAATT
TCGACGAAGGATACGATGAAGGCCATGCCGATGATGAGTTTCCGCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCGTCGCCGTCGCCTTCTCCGTCG
AATACGTCGAGGGAGATGATCACGGCGTATAGATAA
Protein sequenceShow/hide protein sequence
MTEVPLNPVSSHVSFLALFFILWHAVPFLVISPSAQGIYINAQTAPFSQHPSLLFDSQNFSYSVFSYHYSQMDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH
HHHHHRRMSVSSDSDVPGPLTRCSSAKDKSRSRESPEVKTDCRPHFISRLGRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPS
NTSREMITAYR