; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003835 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003835
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPre-mRNA-splicing factor 38
Genome locationscaffold4:44116964..44120898
RNA-Seq ExpressionSpg003835
SyntenySpg003835
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR005037 - Pre-mRNA-splicing factor 38


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2402363.1 Pre-mRNA-splicing factor [Vigna angularis]7.6e-4898.96Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT+GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY

RVW39195.1 Pre-mRNA-splicing factor 38 [Vitis vinifera]6.9e-4982.93Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEK+IV+EFIKNE+YN L 
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE

Query:  KGSVSHGVLWFLKLLFTGLGCFY
                L F  L    LG FY
Subjt:  KGSVSHGVLWFLKLLFTGLGCFY

RVW97880.1 Pre-mRNA-splicing factor 38 [Vitis vinifera]6.9e-4982.93Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEK+IV+EFIKNE+YN L 
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE

Query:  KGSVSHGVLWFLKLLFTGLGCFY
                L F  L    LG FY
Subjt:  KGSVSHGVLWFLKLLFTGLGCFY

XP_022156427.1 pre-mRNA-splicing factor 38 [Momordica charantia]3.4e-48100Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY

XP_025618956.1 pre-mRNA-splicing factor 38 [Arachis hypogaea]7.6e-4898.96Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT+GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY

TrEMBL top hitse value%identityAlignment
A0A438DUL5 Pre-mRNA-splicing factor 383.3e-4982.93Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEK+IV+EFIKNE+YN L 
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE

Query:  KGSVSHGVLWFLKLLFTGLGCFY
                L F  L    LG FY
Subjt:  KGSVSHGVLWFLKLLFTGLGCFY

A0A438IME0 Pre-mRNA-splicing factor 383.3e-4982.93Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEK+IV+EFIKNE+YN L 
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE

Query:  KGSVSHGVLWFLKLLFTGLGCFY
                L F  L    LG FY
Subjt:  KGSVSHGVLWFLKLLFTGLGCFY

A0A444XKH2 Pre-mRNA-splicing factor 383.7e-4898.96Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT+GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY

A0A6J1DS16 Pre-mRNA-splicing factor 381.6e-48100Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY

I1NJ40 Pre-mRNA-splicing factor 383.7e-4898.96Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
        MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT+GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY

SwissProt top hitse value%identityAlignment
Q0P5I6 Pre-mRNA-splicing factor 38A4.1e-3659.84Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE
        MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+  + 
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE

Query:  KGSVSHGVLWFLKLLFTGLGCF
              G L +++L  T + C+
Subjt:  KGSVSHGVLWFLKLLFTGLGCF

Q28H87 Pre-mRNA-splicing factor 38A2.4e-3659.02Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE
        MANRT   A S+ GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL ++GG +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+  + 
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE

Query:  KGSVSHGVLWFLKLLFTGLGCF
            + G L +++L  T   C+
Subjt:  KGSVSHGVLWFLKLLFTGLGCF

Q4FK66 Pre-mRNA-splicing factor 38A3.1e-3659.84Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE
        MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+  + 
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE

Query:  KGSVSHGVLWFLKLLFTGLGCF
              G L +++L  T + C+
Subjt:  KGSVSHGVLWFLKLLFTGLGCF

Q8LB54 Pre-mRNA-splicing factor 381.5e-4687.5Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
        MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGTFGG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DY
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY

Q8NAV1 Pre-mRNA-splicing factor 38A4.1e-3659.84Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE
        MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG +GGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+  + 
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLE

Query:  KGSVSHGVLWFLKLLFTGLGCF
              G L +++L  T + C+
Subjt:  KGSVSHGVLWFLKLLFTGLGCF

Arabidopsis top hitse value%identityAlignment
AT2G40650.1 PRP38 family protein1.1e-4787.5Show/hide
Query:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY
        MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGTFGG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DY
Subjt:  MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATAAGGGGAACGAACCCGCAGAACTTAGTCGAGAAGATTCTTCGCTCGAAGATCTACCAGAACACTTACTGGAAGGA
GCAGTGTTTTGGTTTGACGGCGGAGACATTGGTCGACAAGGCCATGGAGCTCGACCACCTTGGCGGTACATTTGGTGGCAACCGCAAGCCCACGCCGTTCATGTGTCTCG
TTATGAAGATGCTCCAGATTCAGCCGGAGAAAGAAATCGTTATCGAGTTCATCAAGAATGAAGATTACAATTCATTGGAAAAGGGTTCTGTATCTCATGGTGTACTATGG
TTCTTAAAGTTGTTATTTACTGGCCTTGGTTGCTTTTATACCGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATAAGGGGAACGAACCCGCAGAACTTAGTCGAGAAGATTCTTCGCTCGAAGATCTACCAGAACACTTACTGGAAGGA
GCAGTGTTTTGGTTTGACGGCGGAGACATTGGTCGACAAGGCCATGGAGCTCGACCACCTTGGCGGTACATTTGGTGGCAACCGCAAGCCCACGCCGTTCATGTGTCTCG
TTATGAAGATGCTCCAGATTCAGCCGGAGAAAGAAATCGTTATCGAGTTCATCAAGAATGAAGATTACAATTCATTGGAAAAGGGTTCTGTATCTCATGGTGTACTATGG
TTCTTAAAGTTGTTATTTACTGGCCTTGGTTGCTTTTATACCGTATGA
Protein sequenceShow/hide protein sequence
MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYNSLEKGSVSHGVLW
FLKLLFTGLGCFYTV