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Spg003852 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003852
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRegulator of rDNA transcription protein 15
Genome locationscaffold8:22159198..22164877
RNA-Seq ExpressionSpg003852
SyntenySpg003852
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAG7862937.1 unnamed protein product [Brassica rapa]4.1e-1297.5Show/hide
Query:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDR
        ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSY VGLRDR
Subjt:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDR

CAG7888777.1 unnamed protein product, partial [Brassica rapa]4.1e-1297.5Show/hide
Query:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDR
        ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSY VGLRDR
Subjt:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDR

KAG8379553.1 hypothetical protein BUALT_Bualt07G0101000 [Buddleja alternifolia]2.9e-1382Show/hide
Query:  LGEISSYYCHASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDR
        + +I    C ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSY VGLRDR
Subjt:  LGEISSYYCHASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDR

QHN92923.1 uncharacterized protein DS421_17g588220 [Arachis hypogaea]2.4e-1292.86Show/hide
Query:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRNH
        ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSY VGLRDR++
Subjt:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRNH

RAN66223.1 hypothetical protein B5P40_32165, partial [Bacillus sp. SRB_8]3.2e-1292.86Show/hide
Query:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRNH
        ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSY VGLRDR++
Subjt:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRNH

TrEMBL top hitse value%identityAlignment
A0A328KS03 Uncharacterized protein (Fragment)1.5e-1292.86Show/hide
Query:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRNH
        ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSY VGLRDR++
Subjt:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRNH

A0A498KN58 Uncharacterized protein3.4e-1292.86Show/hide
Query:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRNH
        ASGAVTLKKLECSKQAYAL TLAWDNIIGFRSYSVGLRDR++
Subjt:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRNH

A0A6D2HXD2 Uncharacterized protein (Fragment)2.0e-1297.5Show/hide
Query:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDR
        ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSY VGLRDR
Subjt:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDR

A0A7N2N6K8 Uncharacterized protein1.5e-1247.11Show/hide
Query:  VLARFHSNGLVLLDLAGSVIFPSRSGHFKQLLARFSTVRVGSSKFEGVWVD----LKRLGEISSYYCHASGAVTLKKLECSKQAYALYTLAWDNIIGFRS
        VLA   S GLV          PS++ + K+   +F+ V  G     GV        +R     ++   ASGAVTLKKLECSKQAYAL TLAWDNIIGFRS
Subjt:  VLARFHSNGLVLLDLAGSVIFPSRSGHFKQLLARFSTVRVGSSKFEGVWVD----LKRLGEISSYYCHASGAVTLKKLECSKQAYALYTLAWDNIIGFRS

Query:  YSVGLRDRNHFKERVKEEEEE
        YSVGLRDR   K+    +E +
Subjt:  YSVGLRDRNHFKERVKEEEEE

A0A7N2QYV4 Uncharacterized protein1.5e-1297.56Show/hide
Query:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRN
        ASGAVTLKKLECSKQAYAL TLAWDNIIGFRSYSVGLRDRN
Subjt:  ASGAVTLKKLECSKQAYALYTLAWDNIIGFRSYSVGLRDRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGATATTAACACCTACAATTGTTTTAACGAGTGCTCTGTCCGGTCCAAGTGTCCCCAGTTCGTTTCATACGCGTCTGGACTGGTTTTGGCTCGTTTTCACTCCAA
TGGTTTGGTTTTGCTTGATCTGGCCGGTTCAGTGATTTTTCCTTCAAGAAGTGGGCATTTCAAGCAACTTTTGGCTCGGTTCAGCACTGTTAGGGTTGGTTCAAGCAAAT
TTGAAGGGGTTTGGGTTGATTTGAAGCGTTTAGGAGAAATTTCGAGCTATTATTGTCATGCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTAC
GCTCTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAATCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGA
ATTTCGTTGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGGGTGCAAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGATATTAACACCTACAATTGTTTTAACGAGTGCTCTGTCCGGTCCAAGTGTCCCCAGTTCGTTTCATACGCGTCTGGACTGGTTTTGGCTCGTTTTCACTCCAA
TGGTTTGGTTTTGCTTGATCTGGCCGGTTCAGTGATTTTTCCTTCAAGAAGTGGGCATTTCAAGCAACTTTTGGCTCGGTTCAGCACTGTTAGGGTTGGTTCAAGCAAAT
TTGAAGGGGTTTGGGTTGATTTGAAGCGTTTAGGAGAAATTTCGAGCTATTATTGTCATGCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTAC
GCTCTGTATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAATCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGA
ATTTCGTTGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGGGTGCAAAACTAG
Protein sequenceShow/hide protein sequence
MCDINTYNCFNECSVRSKCPQFVSYASGLVLARFHSNGLVLLDLAGSVIFPSRSGHFKQLLARFSTVRVGSSKFEGVWVDLKRLGEISSYYCHASGAVTLKKLECSKQAY
ALYTLAWDNIIGFRSYSVGLRDRNHFKERVKEEEEEEFRCFEVEEDKKSSCKANHSRIWVQN