; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg003854 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003854
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold8:22863413..22869684
RNA-Seq ExpressionSpg003854
SyntenySpg003854
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P
IPR036052 - Tryptophan synthase beta subunit-like PLP-dependent enzyme


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0719002.1 hypothetical protein [Gossypium laxum]4.5e-3485.26Show/hide
Query:  TIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        T+QV ENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK V+IRKHLERNRKDKDSKFRL +V    HR
Subjt:  TIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

OWM71868.1 hypothetical protein CDL15_Pgr017751 [Punica granatum]1.5e-3485.42Show/hide
Query:  LTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        ++IQV ENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRKDKDSKFRL +V    HR
Subjt:  LTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]1.0e-3388.04Show/hide
Query:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        VAENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRKDKDSKFRL +V    HR
Subjt:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

XP_023533955.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo]5.9e-3475.22Show/hide
Query:  IPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDS
        +PY  T+    KI     +  V ENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRKDKDS
Subjt:  IPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDS

Query:  KFRLKVVSILRHR
        KFRL +V    HR
Subjt:  KFRLKVVSILRHR

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]1.0e-3388.04Show/hide
Query:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        VAENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRKDKDSKFRL +V    HR
Subjt:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

TrEMBL top hitse value%identityAlignment
A0A218WH84 Ribosomal_S13_N domain-containing protein7.5e-3585.42Show/hide
Query:  LTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        ++IQV ENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRKDKDSKFRL +V    HR
Subjt:  LTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

A0A6J1KV63 40S ribosomal protein S13-like4.8e-3488.04Show/hide
Query:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        VAENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRKDKDSKFRL +V    HR
Subjt:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

A0A6J5U5F5 Ribosomal_S13_N domain-containing protein4.8e-3476.11Show/hide
Query:  IPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDS
        +PY  T     KI     T  V ENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRKDKDS
Subjt:  IPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDS

Query:  KFRLKVVSILRHR
        KFRL +V    HR
Subjt:  KFRLKVVSILRHR

A0A7J9A571 Ribosomal_S13_N domain-containing protein2.2e-3485.26Show/hide
Query:  TIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        T+QV ENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK V+IRKHLERNRKDKDSKFRL +V    HR
Subjt:  TIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

M5WJE0 Ribosomal_S13_N domain-containing protein4.8e-3476.11Show/hide
Query:  IPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDS
        +PY  T     KI     T  V ENICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRKDKDS
Subjt:  IPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDS

Query:  KFRLKVVSILRHR
        KFRL +V    HR
Subjt:  KFRLKVVSILRHR

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S131.6e-3471.79Show/hide
Query:  SHVVIPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRK
        S   +PY  T     KI     +  V E ICKFAKKGLT SQIGVILRDSH IAQVK+VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLER RK
Subjt:  SHVVIPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRK

Query:  DKDSKFRLKVVSILRHR
        DKDSKFRL +V    HR
Subjt:  DKDSKFRLKVVSILRHR

P59223 40S ribosomal protein S13-12.1e-3483.7Show/hide
Query:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        V E+ICKFAKKGLT SQIGVILRDSH I QVK+VTGSKILRILKAHGLA EIPEDLYHLIKK V+IRKHLERNRKDKDSKFRL +V    HR
Subjt:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

P59224 40S ribosomal protein S13-22.1e-3483.7Show/hide
Query:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        V E+ICKFAKKGLT SQIGVILRDSH I QVK+VTGSKILRILKAHGLA EIPEDLYHLIKK V+IRKHLERNRKDKDSKFRL +V    HR
Subjt:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

P62299 40S ribosomal protein S132.6e-2970.97Show/hide
Query:  QVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        +V E + + AKKGL  SQIGVILRDSH +AQV+ VTG+KI+RILKA G+A EIPEDLYHLIKK V+IRKHLERNRKDKDSK+RL +V    HR
Subjt:  QVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

P62302 40S ribosomal protein S131.1e-3572.65Show/hide
Query:  SHVVIPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRK
        S   +PY  T     KI     +  V ENICKFAKKGLT SQIGVILRDSH IAQV +VTGSKILRILKAHGLA EIPEDLYHLIKK VSIRKHLERNRK
Subjt:  SHVVIPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRK

Query:  DKDSKFRLKVVSILRHR
        DKDSKFRL +V    HR
Subjt:  DKDSKFRLKVVSILRHR

Arabidopsis top hitse value%identityAlignment
AT1G55880.1 Pyridoxal-5'-phosphate-dependent enzyme family protein2.2e-1055.56Show/hide
Query:  VPQALEFGKLVEGGVTMEVSVGSTAISLAIVALAYCCKSHVVIPYDATIEKIGKIDGFPLTIQ
        + +ALE GKL  GG+  E S GSTAISLA VA AY CK HVVIP DA IEK   I+    +++
Subjt:  VPQALEFGKLVEGGVTMEVSVGSTAISLAIVALAYCCKSHVVIPYDATIEKIGKIDGFPLTIQ

AT1G55880.2 Pyridoxal-5'-phosphate-dependent enzyme family protein2.2e-1055.56Show/hide
Query:  VPQALEFGKLVEGGVTMEVSVGSTAISLAIVALAYCCKSHVVIPYDATIEKIGKIDGFPLTIQ
        + +ALE GKL  GG+  E S GSTAISLA VA AY CK HVVIP DA IEK   I+    +++
Subjt:  VPQALEFGKLVEGGVTMEVSVGSTAISLAIVALAYCCKSHVVIPYDATIEKIGKIDGFPLTIQ

AT3G60770.1 Ribosomal protein S13/S151.5e-3583.7Show/hide
Query:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        V E+ICKFAKKGLT SQIGVILRDSH I QVK+VTGSKILRILKAHGLA EIPEDLYHLIKK V+IRKHLERNRKDKDSKFRL +V    HR
Subjt:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR

AT4G00100.1 ribosomal protein S13A1.5e-3583.7Show/hide
Query:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR
        V E+ICKFAKKGLT SQIGVILRDSH I QVK+VTGSKILRILKAHGLA EIPEDLYHLIKK V+IRKHLERNRKDKDSKFRL +V    HR
Subjt:  VAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATTCACACTATTCGTTTTGCAATCCTCTTTGTTGATCGTTCACCGTTCACCGTTCACCGGAGCGTAGCGGCAGAAATAAGGTGGATTCTACAATTTACGTTGTG
TACACTTGCAAGGGAAGAAACAAAAAGTGGGGGAGGGGATCCATCAGTTAAGGCTTACAGAGTGATGGAGCACATGGGAAGTATTAGAAGCACTGCCATAAATCTTGCTA
TAGTTGCTCTTGCTTATGGTTGTAAGTCCCATGTGGCTATTCAATATGGTGCTCCTATTGAGAAGGTGGACATTCCTGAGACTTATCCAATGAAAGTCCCACAGGCCTTA
GAATTTGGTAAGCTAGTTGAGGGTGGTGTAACTATGGAGGTAAGTGTTGGAAGTACTGCCATAAGTCTTGCTATAGTTGCTCTTGCTTATTGTTGCAAGTCCCATGTGGT
AATTCCATATGATGCTACTATTGAGAAGATTGGGAAAATTGATGGCTTTCCTTTGACCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACAAT
CTCAAATTGGTGTTATTCTCCGTGATTCTCATGAGATTGCTCAGGTGAAAAATGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCATGAAATC
CCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAACATTTGGAGAGAAATAGGAAAGACAAGGATTCCAAGTTCAGATTGAAAGTAGTAAGTATTTT
AAGGCACAGAAGCACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCATTCACACTATTCGTTTTGCAATCCTCTTTGTTGATCGTTCACCGTTCACCGTTCACCGGAGCGTAGCGGCAGAAATAAGGTGGATTCTACAATTTACGTTGTG
TACACTTGCAAGGGAAGAAACAAAAAGTGGGGGAGGGGATCCATCAGTTAAGGCTTACAGAGTGATGGAGCACATGGGAAGTATTAGAAGCACTGCCATAAATCTTGCTA
TAGTTGCTCTTGCTTATGGTTGTAAGTCCCATGTGGCTATTCAATATGGTGCTCCTATTGAGAAGGTGGACATTCCTGAGACTTATCCAATGAAAGTCCCACAGGCCTTA
GAATTTGGTAAGCTAGTTGAGGGTGGTGTAACTATGGAGGTAAGTGTTGGAAGTACTGCCATAAGTCTTGCTATAGTTGCTCTTGCTTATTGTTGCAAGTCCCATGTGGT
AATTCCATATGATGCTACTATTGAGAAGATTGGGAAAATTGATGGCTTTCCTTTGACCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACAAT
CTCAAATTGGTGTTATTCTCCGTGATTCTCATGAGATTGCTCAGGTGAAAAATGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCATGAAATC
CCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAACATTTGGAGAGAAATAGGAAAGACAAGGATTCCAAGTTCAGATTGAAAGTAGTAAGTATTTT
AAGGCACAGAAGCACATGA
Protein sequenceShow/hide protein sequence
MSIHTIRFAILFVDRSPFTVHRSVAAEIRWILQFTLCTLAREETKSGGGDPSVKAYRVMEHMGSIRSTAINLAIVALAYGCKSHVAIQYGAPIEKVDIPETYPMKVPQAL
EFGKLVEGGVTMEVSVGSTAISLAIVALAYCCKSHVVIPYDATIEKIGKIDGFPLTIQVAENICKFAKKGLTQSQIGVILRDSHEIAQVKNVTGSKILRILKAHGLAHEI
PEDLYHLIKKVVSIRKHLERNRKDKDSKFRLKVVSILRHRST