CuGenDBv2

Gene ID	Spg003855
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein PARTING DANCERS homolog
Genome location	scaffold8:22930392..22934291
RNA-Seq Expression	Spg003855
Synteny	Spg003855
Gene Ontology terms	GO:0000712 - resolution of meiotic recombination intermediates (biological process) GO:0005737 - cytoplasm (cellular component)
InterPro domains	IPR039172 - Protein parting dancers

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037049.1 uncharacterized protein E6C27_scaffold86G001440 [Cucumis melo var. makuwa]

2.1e-08

69.09

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Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

TYK06602.1 uncharacterized protein E5676_scaffold453G00700 [Cucumis melo var. makuwa]

2.1e-08

69.09

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Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

XP_008441174.1 PREDICTED: uncharacterized protein LOC103485388 isoform X2 [Cucumis melo]

2.1e-08

69.09

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Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

XP_008441175.1 PREDICTED: uncharacterized protein LOC103485388 isoform X3 [Cucumis melo]

2.1e-08

69.09

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Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

XP_030513044.1 protein PARTING DANCERS isoform X2 [Rhodamnia argentea]

1.5e-09

55.38

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Query:  SQKGLDIQFWGLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        S  GL  Q WG + GFC ++ LG+Q + I +   +KLK++FA+ YVVV L TKEQNDSFV SYFR
Subjt:  SQKGLDIQFWGLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B2D1 uncharacterized protein LOC103485388 isoform X3

1.0e-08

69.09

Show/hide

Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

A0A1S3B3G4 uncharacterized protein LOC103485388 isoform X1

1.0e-08

69.09

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Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

A0A1S3B3K1 uncharacterized protein LOC103485388 isoform X2

1.0e-08

69.09

Show/hide

Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

A0A5A7T6P8 Uncharacterized protein

1.0e-08

69.09

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Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

A0A5D3C5R1 Uncharacterized protein

1.0e-08

69.09

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Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        GL   F F  +          SRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

SwissProt top hits

e value

%identity

Alignment

F4IDW9 Protein PARTING DANCERS

5.1e-05

47.27

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Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        G+   F F             SRV++LK QFA LYVV  L TKEQ+DSF++SYF+
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

F4JKH6 Protein TSS

3.0e-05

53.49

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Query:  VISSSSNLAFISFEDENWGGNKGVQGRDGKHNLRQWAKEFAIL
        V  S S    +  EDE WGG+ G  GR GK++ R+WAKEFAIL
Subjt:  VISSSSNLAFISFEDENWGGNKGVQGRDGKHNLRQWAKEFAIL

Q6L5B5 Protein PARTING DANCERS homolog

1.5e-04

48.15

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Query:  LIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        L   F F  N   Q      SRV  LK+Q  +LYVVV +PTKEQN+SF +SY +
Subjt:  LIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

Arabidopsis top hits

e value

%identity

Alignment

AT1G01320.1 Tetratricopeptide repeat (TPR)-like superfamily protein

2.6e-04

56.67

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Query:  EDENWGGNKGVQGRDGKHNLRQWAKEFAIL
        EDE WGG+ G QGRDG ++L  W+ EFA +
Subjt:  EDENWGGNKGVQGRDGKHNLRQWAKEFAIL

AT1G01320.2 Tetratricopeptide repeat (TPR)-like superfamily protein

2.6e-04

56.67

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Query:  EDENWGGNKGVQGRDGKHNLRQWAKEFAIL
        EDE WGG+ G QGRDG ++L  W+ EFA +
Subjt:  EDENWGGNKGVQGRDGKHNLRQWAKEFAIL

AT1G12790.1 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

3.6e-06

47.27

Show/hide

Query:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR
        G+   F F             SRV++LK QFA LYVV  L TKEQ+DSF++SYF+
Subjt:  GLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

AT1G15290.1 Tetratricopeptide repeat (TPR)-like superfamily protein

4.0e-05

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Query:  EDENWGGNKGVQGRDGKHNLRQWAKEFAIL
        EDE+WGGN G QGR+G+++ R WA EF++L
Subjt:  EDENWGGNKGVQGRDGKHNLRQWAKEFAIL

AT4G28080.1 Tetratricopeptide repeat (TPR)-like superfamily protein

2.1e-06

53.49

Show/hide

Query:  VISSSSNLAFISFEDENWGGNKGVQGRDGKHNLRQWAKEFAIL
        V  S S    +  EDE WGG+ G  GR GK++ R+WAKEFAIL
Subjt:  VISSSSNLAFISFEDENWGGNKGVQGRDGKHNLRQWAKEFAIL

Sequences

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CDS sequence

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ATGGCTCTTTTGCCGTATGGATATGCCTCTGTCATTGGCAGCTTCAGTCAAATTCCCCCAATTCGTATGGCATTCGAGTATTTGAAAGGGAATGATATTTCATCTTTAAA
TGGCAATATCATGGATTTTGAACCTGGAGAGTTTCTTAATGTGAAGGTAATTTCATCAAGCTCAAATCTTGCATTTATTAGTTTTGAAGATGAGAATTGGGGAGGAAATA
AGGGAGTGCAAGGAAGAGATGGCAAGCATAACCTTAGGCAGTGGGCAAAAGAGTTTGCGATATTAGTTGATGAAGAAAGCCCTGCAACCTATTTTACTTCACAGAAAGGA
CTTGATATTCAATTTTGGGGGCTTATCTATGGCTTTTGTTTTCACGACAATTTGGGATTGCAGCAATACATCATCAATCTTAGCAGAGTTCAAAAGTTGAAGAAGCAATT
TGCAAATTTATATGTTGTTGTTGTCCTTCCAACCAAGGAGCAGAATGATTCATTTGTACAATCTTACTTCAGGTAA

mRNA sequence

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Protein sequence

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MALLPYGYASVIGSFSQIPPIRMAFEYLKGNDISSLNGNIMDFEPGEFLNVKVISSSSNLAFISFEDENWGGNKGVQGRDGKHNLRQWAKEFAILVDEESPATYFTSQKG
LDIQFWGLIYGFCFHDNLGLQQYIINLSRVQKLKKQFANLYVVVVLPTKEQNDSFVQSYFR

Spg003855 (gene) of Sponge gourd (cylindrica) v1 genome