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Spg003856 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003856
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:22599477..22603497
RNA-Seq ExpressionSpg003856
SyntenySpg003856
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040577.1 uncharacterized protein E6C27_scaffold262G001470 [Cucumis melo var. makuwa]7.5e-1646.61Show/hide
Query:  FPFLQVEIELPVPDTLPTSVES---------------------CSML---------------QEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHS
        FP   VEIELPVPDTLPTS ES                     C ++                 G    +  D+V  +HA+ R K+ GGP GGVTTWSH+
Subjt:  FPFLQVEIELPVPDTLPTSVES---------------------CSML---------------QEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHS

Query:  TTYQQTTQAESGRDAGSY
        TTYQQTTQAESGRDAGSY
Subjt:  TTYQQTTQAESGRDAGSY

KAA0066738.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1754.05Show/hide
Query:  SNLCCLCSGHIWTYWLGIPFPFLQVEIELPVPDTLPT------SVESCS-MLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAE
        S L  L    +  Y + + FP   VEIELP PDTLPT       V + S +  EG    +  D+V WLHA+FRAK AGG  GGVTTWSH+TTYQQTTQAE
Subjt:  SNLCCLCSGHIWTYWLGIPFPFLQVEIELPVPDTLPT------SVESCS-MLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAE

Query:  SGRDAGSYRES
        S  DAGSY  S
Subjt:  SGRDAGSYRES

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]3.3e-1963.22Show/hide
Query:  EIELPVPDTLPTSVESCSMLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAESGRDAGSYRESVLKGIQYP
        EIELPVPDTL TS ES         + +  D+V WLHAIFRAK+ GGP GGVTTWSH+TTYQQTTQAESG DAGSY     +G   P
Subjt:  EIELPVPDTLPTSVESCSMLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAESGRDAGSYRESVLKGIQYP

TYK05620.1 uncharacterized protein E5676_scaffold98G00770 [Cucumis melo var. makuwa]7.5e-1646.61Show/hide
Query:  FPFLQVEIELPVPDTLPTSVES---------------------CSML---------------QEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHS
        FP   VEIELPVPDTLPTS ES                     C ++                 G    +  D+V  +HA+ R K+ GGP GGVTTWSH+
Subjt:  FPFLQVEIELPVPDTLPTSVES---------------------CSML---------------QEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHS

Query:  TTYQQTTQAESGRDAGSY
        TTYQQTTQAESGRDAGSY
Subjt:  TTYQQTTQAESGRDAGSY

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-1435.63Show/hide
Query:  VEIELPVPDTLPTSVESCS----------------------------------MLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTT
        VEIELPV D LPTS ES                                    +  EG    +  D+V WLHA+F+AK  GGPRGGVTTWSH+TTY QTT
Subjt:  VEIELPVPDTLPTSVESCS----------------------------------MLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTT

Query:  QAESGRDAGSYRESVLKGIQYPDEGVHVTQAEAIEDRKHLRHSILLLKHACSIKDRKESLERTNLCSSQMRSEF
        QAE G DAGSY  S  +  + P++       +  E  +  +    + + +  + D +E    T  C ++ R EF
Subjt:  QAESGRDAGSYRESVLKGIQYPDEGVHVTQAEAIEDRKHLRHSILLLKHACSIKDRKESLERTNLCSSQMRSEF

TrEMBL top hitse value%identityAlignment
A0A5A7TG84 Uncharacterized protein3.6e-1646.61Show/hide
Query:  FPFLQVEIELPVPDTLPTSVES---------------------CSML---------------QEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHS
        FP   VEIELPVPDTLPTS ES                     C ++                 G    +  D+V  +HA+ R K+ GGP GGVTTWSH+
Subjt:  FPFLQVEIELPVPDTLPTSVES---------------------CSML---------------QEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHS

Query:  TTYQQTTQAESGRDAGSY
        TTYQQTTQAESGRDAGSY
Subjt:  TTYQQTTQAESGRDAGSY

A0A5D3BNX1 Zf-CCHC domain-containing protein1.6e-1963.22Show/hide
Query:  EIELPVPDTLPTSVESCSMLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAESGRDAGSYRESVLKGIQYP
        EIELPVPDTL TS ES         + +  D+V WLHAIFRAK+ GGP GGVTTWSH+TTYQQTTQAESG DAGSY     +G   P
Subjt:  EIELPVPDTLPTSVESCSMLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAESGRDAGSYRESVLKGIQYP

A0A5D3C2P9 Uncharacterized protein3.6e-1646.61Show/hide
Query:  FPFLQVEIELPVPDTLPTSVES---------------------CSML---------------QEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHS
        FP   VEIELPVPDTLPTS ES                     C ++                 G    +  D+V  +HA+ R K+ GGP GGVTTWSH+
Subjt:  FPFLQVEIELPVPDTLPTSVES---------------------CSML---------------QEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHS

Query:  TTYQQTTQAESGRDAGSY
        TTYQQTTQAESGRDAGSY
Subjt:  TTYQQTTQAESGRDAGSY

A0A5D3C867 DNA/RNA polymerases superfamily protein1.5e-1435.63Show/hide
Query:  VEIELPVPDTLPTSVESCS----------------------------------MLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTT
        VEIELPV D LPTS ES                                    +  EG    +  D+V WLHA+F+AK  GGPRGGVTTWSH+TTY QTT
Subjt:  VEIELPVPDTLPTSVESCS----------------------------------MLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTT

Query:  QAESGRDAGSYRESVLKGIQYPDEGVHVTQAEAIEDRKHLRHSILLLKHACSIKDRKESLERTNLCSSQMRSEF
        QAE G DAGSY  S  +  + P++       +  E  +  +    + + +  + D +E    T  C ++ R EF
Subjt:  QAESGRDAGSYRESVLKGIQYPDEGVHVTQAEAIEDRKHLRHSILLLKHACSIKDRKESLERTNLCSSQMRSEF

A0A5D3DVW9 DNA/RNA polymerases superfamily protein8.6e-1854.05Show/hide
Query:  SNLCCLCSGHIWTYWLGIPFPFLQVEIELPVPDTLPT------SVESCS-MLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAE
        S L  L    +  Y + + FP   VEIELP PDTLPT       V + S +  EG    +  D+V WLHA+FRAK AGG  GGVTTWSH+TTYQQTTQAE
Subjt:  SNLCCLCSGHIWTYWLGIPFPFLQVEIELPVPDTLPT------SVESCS-MLQEGQRVSLEEDNVRWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAE

Query:  SGRDAGSYRES
        S  DAGSY  S
Subjt:  SGRDAGSYRES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTTGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTT
GACTCAGAAGCTCTATTTGGAGAAAGATAAAGGGCAGCAGAGAACGTCGAATCTGTGTTGTCTGTGTTCGGGGCATATCTGGACATATTGGTTGGGAATCCCATTTCCAT
TTCTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTGTTCAATGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGACAATGTT
CGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAACTTGGAGTCATTCCACCACGTACCAGCAGACGACGCAGGCGGAATCAGG
ACGGGATGCAGGATCCTACCGAGAGTCAGTCTTAAAGGGGATCCAGTACCCCGATGAAGGTGTACATGTTACACAAGCGGAAGCAATTGAAGATCGAAAGCACTTAAGAC
ATTCAATTTTGCTCCTAAAGCATGCATGTTCTATAAAAGACAGAAAAGAGAGTTTAGAGAGAACCAACCTTTGTAGCTCACAAATGAGGAGTGAATTCCGTCTTGCAAAA
CTATGTCCCCAGCTATCTATGCGATCTCATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATGCTGGCCACTCTCACCCATGCAGATCAAAGGATAATCTCGTATAGACA
GGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGGTCATCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTTGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTT
GACTCAGAAGCTCTATTTGGAGAAAGATAAAGGGCAGCAGAGAACGTCGAATCTGTGTTGTCTGTGTTCGGGGCATATCTGGACATATTGGTTGGGAATCCCATTTCCAT
TTCTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTGTTCAATGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGACAATGTT
CGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAACTTGGAGTCATTCCACCACGTACCAGCAGACGACGCAGGCGGAATCAGG
ACGGGATGCAGGATCCTACCGAGAGTCAGTCTTAAAGGGGATCCAGTACCCCGATGAAGGTGTACATGTTACACAAGCGGAAGCAATTGAAGATCGAAAGCACTTAAGAC
ATTCAATTTTGCTCCTAAAGCATGCATGTTCTATAAAAGACAGAAAAGAGAGTTTAGAGAGAACCAACCTTTGTAGCTCACAAATGAGGAGTGAATTCCGTCTTGCAAAA
CTATGTCCCCAGCTATCTATGCGATCTCATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATGCTGGCCACTCTCACCCATGCAGATCAAAGGATAATCTCGTATAGACA
GGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGGTCATCTATGA
Protein sequenceShow/hide protein sequence
MRSLWFLKWKTEHRIFVQTRRISGVLWCFEHSGVYKLTQKLYLEKDKGQQRTSNLCCLCSGHIWTYWLGIPFPFLQVEIELPVPDTLPTSVESCSMLQEGQRVSLEEDNV
RWLHAIFRAKLAGGPRGGVTTWSHSTTYQQTTQAESGRDAGSYRESVLKGIQYPDEGVHVTQAEAIEDRKHLRHSILLLKHACSIKDRKESLERTNLCSSQMRSEFRLAK
LCPQLSMRSHPQNGRLVESAMLATLTHADQRIISYRQEFIVSSGLRTSYLGHL