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Spg003857 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003857
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:22616965..22620549
RNA-Seq ExpressionSpg003857
SyntenySpg003857
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.1e-1738.34Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE--GQRVSLEEDDVRWLHAIFRAKLAGGPRGG
        PRGNR SLQT EL KT                 VEIELP+PDTL TS ESS S+SST +ELY ESV++E  G    +  DDV WLHA+FRAK  GGP GG
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE--GQRVSLEEDDVRWLHAIFRAKLAGGPRGG

Query:  KFVLNTTEQR-------------SSSHGS-------------------RVWQPELHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGE
             T+ +R              S  GS                    + +PE  G   PE+   + R +KL    +  S   L + EK+ E
Subjt:  KFVLNTTEQR-------------SSSHGS-------------------RVWQPELHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGE

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.4e-1733.65Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLQTSVESSRSSSSTWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGGK
        PRGNR +L T +L KTVEIELPVPDTL TS ESS+S+SSTW+ELY ESV++                  EG    +  DD+ WLHA+F AK AG P GG 
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLQTSVESSRSSSSTWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGGK

Query:  FVLNTTEQRSSSHGSRVWQPE---LHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGEANCYTKKKVKGRAPYISPDLGQRRDAVTSLNLLAKKC
            T+ +R  +     +  +     GS +P  +  +   R       ++ P++    + D     Y  +++K     +        DA   LN+L K  
Subjt:  FVLNTTEQRSSSHGSRVWQPE---LHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGEANCYTKKKVKGRAPYISPDLGQRRDAVTSLNLLAKKC

Query:  DSIAKLSPQRL
        D ++    Q++
Subjt:  DSIAKLSPQRL

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.7e-1841.71Show/hide
Query:  VYKLNQKLYWVWRKIKGSREPRICVVCVRGIPGQIGWESHFDFFR--------------PRGNRSSLQTRELAKT-----------------VEIELPVP
        V+K NQKLY     I+  REPRI      G          F F +              PRGNRSSLQT EL KT                 VEIELPVP
Subjt:  VYKLNQKLYWVWRKIKGSREPRICVVCVRGIPGQIGWESHFDFFR--------------PRGNRSSLQTRELAKT-----------------VEIELPVP

Query:  DTLQTSVESSRSSSSTWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGG
        DTL TS ES  S+SSTW+ELY E V++                  EG    +  DDV WLH +FRAK+AGGP GG
Subjt:  DTLQTSVESSRSSSSTWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.6e-1638.82Show/hide
Query:  FFRPRGNRSSLQTRELAKTV---------------EIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE---------------------GQRVSLEED
        +  PRGNR SLQT EL KTV                IELPVPDTL TS ESS S+SSTW+ELY ESV++E                     G    +  D
Subjt:  FFRPRGNRSSLQTRELAKTV---------------EIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE---------------------GQRVSLEED

Query:  DVRWLHAIFRAKLAGGPRGGKFVLNTTEQRS---------SSHGSRVWQPELHGSRSPEERICLRRTRKL
        DV WLHA+FRAK  GGP GG     ++ QR          +     + +PE  G   P++   + R +KL
Subjt:  DVRWLHAIFRAKLAGGPRGGKFVLNTTEQRS---------SSHGSRVWQPELHGSRSPEERICLRRTRKL

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.1e-1738.34Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE--GQRVSLEEDDVRWLHAIFRAKLAGGPRGG
        PRGNR SLQT EL KT                 VEIELP+PDTL TS ESS S+SST +ELY ESV++E  G    +  DDV WLHA+FRAK  GGP GG
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE--GQRVSLEEDDVRWLHAIFRAKLAGGPRGG

Query:  KFVLNTTEQR-------------SSSHGS-------------------RVWQPELHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGE
             T+ +R              S  GS                    + +PE  G   PE+   + R +KL    +  S   L + EK+ E
Subjt:  KFVLNTTEQR-------------SSSHGS-------------------RVWQPELHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGE

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.2e-1733.65Show/hide
Query:  PRGNRSSLQTRELAKTVEIELPVPDTLQTSVESSRSSSSTWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGGK
        PRGNR +L T +L KTVEIELPVPDTL TS ESS+S+SSTW+ELY ESV++                  EG    +  DD+ WLHA+F AK AG P GG 
Subjt:  PRGNRSSLQTRELAKTVEIELPVPDTLQTSVESSRSSSSTWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGGK

Query:  FVLNTTEQRSSSHGSRVWQPE---LHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGEANCYTKKKVKGRAPYISPDLGQRRDAVTSLNLLAKKC
            T+ +R  +     +  +     GS +P  +  +   R       ++ P++    + D     Y  +++K     +        DA   LN+L K  
Subjt:  FVLNTTEQRSSSHGSRVWQPE---LHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGEANCYTKKKVKGRAPYISPDLGQRRDAVTSLNLLAKKC

Query:  DSIAKLSPQRL
        D ++    Q++
Subjt:  DSIAKLSPQRL

A0A5A7UT17 CCHC-type domain-containing protein9.9e-1738.92Show/hide
Query:  PRGNRSSLQTRELAKT---------------VEIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE---------------------GQRVSLEEDDVR
        PRGNR SLQTREL KT               V IELPVPD L TS ESS S+SSTW+ELY ESV++E                     G    +  DDV 
Subjt:  PRGNRSSLQTRELAKT---------------VEIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE---------------------GQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPRGG---------KFVLNTTEQRSSSHGSRVWQPELHGSRSPEERICLRRTRKL
        WLHA+FRAK  GGP GG         +  +    +R +     + +PE  G  +P++   + R +KL
Subjt:  WLHAIFRAKLAGGPRGG---------KFVLNTTEQRSSSHGSRVWQPELHGSRSPEERICLRRTRKL

A0A5A7VIY9 Uncharacterized protein1.8e-1841.71Show/hide
Query:  VYKLNQKLYWVWRKIKGSREPRICVVCVRGIPGQIGWESHFDFFR--------------PRGNRSSLQTRELAKT-----------------VEIELPVP
        V+K NQKLY     I+  REPRI      G          F F +              PRGNRSSLQT EL KT                 VEIELPVP
Subjt:  VYKLNQKLYWVWRKIKGSREPRICVVCVRGIPGQIGWESHFDFFR--------------PRGNRSSLQTRELAKT-----------------VEIELPVP

Query:  DTLQTSVESSRSSSSTWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGG
        DTL TS ES  S+SSTW+ELY E V++                  EG    +  DDV WLH +FRAK+AGGP GG
Subjt:  DTLQTSVESSRSSSSTWVELYIESVYI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPRGG

A0A5D3BTP3 Reverse transcriptase1.9e-1537.02Show/hide
Query:  VYKLNQKLYWVWRKIKGSREPRICVVCVRGIPGQIGW-ESHFDFFR----------------PRGNRSSLQTRELAKT----------------------
        V+K NQKLY     I+  REPRI + C+      + W    F F +                PRGNR SLQT E+ KT                      
Subjt:  VYKLNQKLYWVWRKIKGSREPRICVVCVRGIPGQIGW-ESHFDFFR----------------PRGNRSSLQTRELAKT----------------------

Query:  --------------------------VEIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE-GQRVSLEE----------------DDVRWLHAIFRAK
                                  VEIELPVPD L TS ESSRS+SSTW+ELY ESV++E   +V L+                 DDV WLHAIFRAK
Subjt:  --------------------------VEIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE-GQRVSLEE----------------DDVRWLHAIFRAK

Query:  LAGGPRGG
         AGGP GG
Subjt:  LAGGPRGG

A0A5D3CJX3 CCHC-type domain-containing protein7.6e-1738.82Show/hide
Query:  FFRPRGNRSSLQTRELAKTV---------------EIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE---------------------GQRVSLEED
        +  PRGNR SLQT EL KTV                IELPVPDTL TS ESS S+SSTW+ELY ESV++E                     G    +  D
Subjt:  FFRPRGNRSSLQTRELAKTV---------------EIELPVPDTLQTSVESSRSSSSTWVELYIESVYIE---------------------GQRVSLEED

Query:  DVRWLHAIFRAKLAGGPRGGKFVLNTTEQRS---------SSHGSRVWQPELHGSRSPEERICLRRTRKL
        DV WLHA+FRAK  GGP GG     ++ QR          +     + +PE  G   P++   + R +KL
Subjt:  DVRWLHAIFRAKLAGGPRGGKFVLNTTEQRS---------SSHGSRVWQPELHGSRSPEERICLRRTRKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTTGTGCAAACCAGGAGGATCTCTGGTGTTCTTTGGTGTTTTGAGCATTCTGGGGTGTACAAGTT
GAATCAAAAGCTCTATTGGGTATGGAGAAAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTCCTGGACAAATTGGTTGGGAATCCCATT
TTGATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACTAGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCAAACGTCTGTTGAA
AGTTCCAGATCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCAT
CTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGAAAATTTGTGCTAAACACCACTGAACAGAGGTCGTCGTCGCATGGGTCTCGAGTTTGGCAGCCGGAATTGCATG
GGTCTCGCTCGCCTGAGGAGAGGATTTGCTTGAGACGGACTAGGAAGCTACCTCGACATTCGTGGGTAGCCTCGCCGCAAAAGCTCATCGAAGATGAAAAGGATGGGGAA
GCGAACTGCTACACGAAGAAGAAAGTGAAGGGGAGGGCGCCTTATATAAGCCCGGATTTGGGACAGCGTCGCGACGCTGTGACGTCACTCAACTTGCTGGCCAAGAAATG
TGACAGCATCGCGAAGCTGTCCCCACAGCGTCTCGACGCTGTGGGGATTTCAGACCAGGCTGGCGCGGATTGGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTTGTGCAAACCAGGAGGATCTCTGGTGTTCTTTGGTGTTTTGAGCATTCTGGGGTGTACAAGTT
GAATCAAAAGCTCTATTGGGTATGGAGAAAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTCCTGGACAAATTGGTTGGGAATCCCATT
TTGATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACTAGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCAAACGTCTGTTGAA
AGTTCCAGATCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCAT
CTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGAAAATTTGTGCTAAACACCACTGAACAGAGGTCGTCGTCGCATGGGTCTCGAGTTTGGCAGCCGGAATTGCATG
GGTCTCGCTCGCCTGAGGAGAGGATTTGCTTGAGACGGACTAGGAAGCTACCTCGACATTCGTGGGTAGCCTCGCCGCAAAAGCTCATCGAAGATGAAAAGGATGGGGAA
GCGAACTGCTACACGAAGAAGAAAGTGAAGGGGAGGGCGCCTTATATAAGCCCGGATTTGGGACAGCGTCGCGACGCTGTGACGTCACTCAACTTGCTGGCCAAGAAATG
TGACAGCATCGCGAAGCTGTCCCCACAGCGTCTCGACGCTGTGGGGATTTCAGACCAGGCTGGCGCGGATTGGGCTTGA
Protein sequenceShow/hide protein sequence
MRSLWFLKWKTEHRIFVQTRRISGVLWCFEHSGVYKLNQKLYWVWRKIKGSREPRICVVCVRGIPGQIGWESHFDFFRPRGNRSSLQTRELAKTVEIELPVPDTLQTSVE
SSRSSSSTWVELYIESVYIEGQRVSLEEDDVRWLHAIFRAKLAGGPRGGKFVLNTTEQRSSSHGSRVWQPELHGSRSPEERICLRRTRKLPRHSWVASPQKLIEDEKDGE
ANCYTKKKVKGRAPYISPDLGQRRDAVTSLNLLAKKCDSIAKLSPQRLDAVGISDQAGADWA