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Spg003860 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003860
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold8:23329444..23335039
RNA-Seq ExpressionSpg003860
SyntenySpg003860
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]1.7e-2450Show/hide
Query:  MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYM
        MQS+P +NL A ++    LF LSY EGTK  + F +K     +    L+   V   ++ L+  + +        M   PRGNR SLQTGELD TISIDYM
Subjt:  MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYM

Query:  TEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIES
        TEILS RLYGTVCT                  VEIELP+PD LPTSAESS S+SSTWLELY ES
Subjt:  TEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIES

KAA0066850.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.2e-1865.88Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIE
        PR NR SLQTGELDKT+SIDYMTEILS R YGTVCTQ                 VEIELP+PDTLP+S ES  S+SSTWLELY E
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIE

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-1867.44Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIES
        PR NR SLQTGELDKT+SIDYMTEILS RL GTVCTQ                 VEIELP+PDTLPTSAE   S+SSTWLELY+ES
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIES

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]6.4e-1947.74Show/hide
Query:  MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYM
        MQS+P +NL A ++    LF LSY EGTK  + F +K     +    L+   V   ++ L+  + +        M   PRGNRSSLQT ELD TISIDYM
Subjt:  MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYM

Query:  TEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSS
        TEILS RLYGTVCT                  VEIELP+PD LPTSAESS S+SS
Subjt:  TEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSS

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.2e-1865.88Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIE
        PR NR SLQTGELDKT+SIDYMTEILS R YGTVCTQ                 VEIELP+PDTLP+S ES  S+SSTWLELY E
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein8.4e-2550Show/hide
Query:  MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYM
        MQS+P +NL A ++    LF LSY EGTK  + F +K     +    L+   V   ++ L+  + +        M   PRGNR SLQTGELD TISIDYM
Subjt:  MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYM

Query:  TEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIES
        TEILS RLYGTVCT                  VEIELP+PD LPTSAESS S+SSTWLELY ES
Subjt:  TEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIES

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein2.0e-1865.88Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIE
        PR NR SLQTGELDKT+SIDYMTEILS R YGTVCTQ                 VEIELP+PDTLP+S ES  S+SSTWLELY E
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIE

A0A5D3CCC7 DNA/RNA polymerases superfamily protein9.0e-1967.44Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIES
        PR NR SLQTGELDKT+SIDYMTEILS RL GTVCTQ                 VEIELP+PDTLPTSAE   S+SSTWLELY+ES
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIES

A0A5D3DE96 Uncharacterized protein3.1e-1947.74Show/hide
Query:  MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYM
        MQS+P +NL A ++    LF LSY EGTK  + F +K     +    L+   V   ++ L+  + +        M   PRGNRSSLQT ELD TISIDYM
Subjt:  MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYM

Query:  TEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSS
        TEILS RLYGTVCT                  VEIELP+PD LPTSAESS S+SS
Subjt:  TEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSS

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein2.0e-1865.88Show/hide
Query:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIE
        PR NR SLQTGELDKT+SIDYMTEILS R YGTVCTQ                 VEIELP+PDTLP+S ES  S+SSTWLELY E
Subjt:  PRGNRSSLQTGELDKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSTWLELYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATGGAAGAATCTGGGTGCAAAACTGTCAACCTCTAGTTTTTTATTCCGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAA
GCAGGAGGATCTCTGGTTGTCTCTGATTTTTTTAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTCAGTATGGTTGGAAATCTTATTCAATTATCTACAACTT
TCATGCAGAATTCGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGT
ACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTC
CCACTTGCGGGAGAGAGTGAAGGAGGAAGAAGAAAAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGC
AAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATGGAAGAATCTGGGTGCAAAACTGTCAACCTCTAGTTTTTTATTCCGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAA
GCAGGAGGATCTCTGGTTGTCTCTGATTTTTTTAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTCAGTATGGTTGGAAATCTTATTCAATTATCTACAACTT
TCATGCAGAATTCGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGT
ACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTC
CCACTTGCGGGAGAGAGTGAAGGAGGAAGAAGAAAAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGC
AAAACTAG
Protein sequenceShow/hide protein sequence
MQSQPWKNLGAKLSTSSFLFRLSYTEGTKRAQDFRAKQEDLWLSLIFLAFWGVQVESEALFSMVGNLIQLSTTFMQNSPRGNRSSLQTGELDKTISIDYMTEILSPRLYG
TVCTQVEIELPMPDTLPTSAESSRSSSSTWLELYIESHLRERVKEEEEKEFRGFEVEEDKKSSCKASHSRIWVQN