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Spg003861 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003861
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:23256784..23259902
RNA-Seq ExpressionSpg003861
SyntenySpg003861
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]1.1e-0774.36Show/hide
Query:  GYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
        GY+ L TL VLRDND +VSAGR  LRQR+WECWA PTTS
Subjt:  GYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-0545.26Show/hide
Query:  SGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQN------HPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
        SG F+  +L +  SFL L  W+    L++   +L+N      +  SL T  +  ++   PL TL VL DND VVSAG+A LRQRRWEC  GPTTS
Subjt:  SGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQN------HPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-0545.26Show/hide
Query:  SGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQN------HPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
        SG F+  +L +  SFL L  W+    L++   +L+N      +  SL T  +  ++   PL TL VL DND VVSAG+A LRQRRWEC  GPTTS
Subjt:  SGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQN------HPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein5.3e-0874.36Show/hide
Query:  GYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
        GY+ L TL VLRDND +VSAGR  LRQR+WECWA PTTS
Subjt:  GYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
A0A5A7T7M6 Reverse transcriptase5.0e-0645.26Show/hide
Query:  SGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQN------HPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
        SG F+  +L +  SFL L  W+    L++   +L+N      +  SL T  +  ++   PL TL VL DND VVSAG+A LRQRRWEC  GPTTS
Subjt:  SGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQN------HPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
A0A5A7TDY3 Uncharacterized protein6.1e-0474.29Show/hide
Query:  LFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
        L TL VLR+ND  VSAGR  LRQRRWEC  GPTTS
Subjt:  LFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
A0A5D3BTP3 Reverse transcriptase5.0e-0645.26Show/hide
Query:  SGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQN------HPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
        SG F+  +L +  SFL L  W+    L++   +L+N      +  SL T  +  ++   PL TL VL DND VVSAG+A LRQRRWEC  GPTTS
Subjt:  SGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQN------HPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
A0A5D3DUS7 Uncharacterized protein7.9e-0474.29Show/hide
Query:  LFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
        L TL VLR+ND  VSAGR  LRQRRWEC  GPTTS
Subjt:  LFTLRVLRDNDVVVSAGRALLRQRRWECWAGPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTATCCGCCTGGGGTGAGATTCGAGCTTGATCAAGAGATCGAAGGGACATTTAGGAGAAGAAGGAGAGAGCAGCGAAGAAATCAAAATCCAGTGGATAACGTGCC
GCGTCTCTTGGAAGTTCCAGAAGATCAATTTAATCCCCAGCAGAATCGTGTGTTGCAGCCTAATCCACCGCTGGAGCAAAATGGACAACAAAATAATCAGGCTAAGAACC
CTATCTTGGTAGCGATTGATAGGGCCAGAGCCATTCGATCGTATGCTTTTCCGATCAGGCACAGCGTCGCGACGCTGACGTTACAGCGTGGCGACACTGTTACGTCAGCA
GACTTGGAGCACAAGTTGGTGCAGCGTTGCGACACTGTCGCGATTCCAGATCCTTCCTCGCAGCTTGCCAAGCGTCTCGACACTAGGCCTCGGTCTTCAATGAGTGGCCC
GTTTTTTACTCAATTTTTGGGCCTCCAACTTTCTTTTCTTGCGCTCTTGGTTTGGATCTTCAATGAACTTCTTCAAATTGCTCCAAAAAGCCTCCAAAATCATCCAAATT
CTCTCATAACTCCAATTTTGCTTCCTTCACTCGGTTATATTCCGTTGTTCACGTTGCGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCCCTACTACGA
CAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTATCCGCCTGGGGTGAGATTCGAGCTTGATCAAGAGATCGAAGGGACATTTAGGAGAAGAAGGAGAGAGCAGCGAAGAAATCAAAATCCAGTGGATAACGTGCC
GCGTCTCTTGGAAGTTCCAGAAGATCAATTTAATCCCCAGCAGAATCGTGTGTTGCAGCCTAATCCACCGCTGGAGCAAAATGGACAACAAAATAATCAGGCTAAGAACC
CTATCTTGGTAGCGATTGATAGGGCCAGAGCCATTCGATCGTATGCTTTTCCGATCAGGCACAGCGTCGCGACGCTGACGTTACAGCGTGGCGACACTGTTACGTCAGCA
GACTTGGAGCACAAGTTGGTGCAGCGTTGCGACACTGTCGCGATTCCAGATCCTTCCTCGCAGCTTGCCAAGCGTCTCGACACTAGGCCTCGGTCTTCAATGAGTGGCCC
GTTTTTTACTCAATTTTTGGGCCTCCAACTTTCTTTTCTTGCGCTCTTGGTTTGGATCTTCAATGAACTTCTTCAAATTGCTCCAAAAAGCCTCCAAAATCATCCAAATT
CTCTCATAACTCCAATTTTGCTTCCTTCACTCGGTTATATTCCGTTGTTCACGTTGCGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGGCGGGCCCTACTACGA
CAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MSYPPGVRFELDQEIEGTFRRRRREQRRNQNPVDNVPRLLEVPEDQFNPQQNRVLQPNPPLEQNGQQNNQAKNPILVAIDRARAIRSYAFPIRHSVATLTLQRGDTVTSA
DLEHKLVQRCDTVAIPDPSSQLAKRLDTRPRSSMSGPFFTQFLGLQLSFLALLVWIFNELLQIAPKSLQNHPNSLITPILLPSLGYIPLFTLRVLRDNDVVVSAGRALLR
QRRWECWAGPTTS