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Spg003871 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003871
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold8:21990002..21991775
RNA-Seq ExpressionSpg003871
SyntenySpg003871
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-3235.07Show/hide
Query:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNR-------------PFPWFNELALVF
        + SK  K  WT+  D VL++CL+ LV+  GWR DNGTF+LG+  Q++K+MKE++ G NI V+ N++S+ K L+ +              F W  E   + 
Subjt:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNR-------------PFPWFNELALVF

Query:  GKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR---------------
         + S         +K A + E     E+DM+++ ED  +P+P  ++P S E++  TPT  A  AG SR S++RR   G++ +  R               
Subjt:  GKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR---------------

Query:  ----KDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP
            K EI+ +  K LY + Q+IP + +DD L+VA +LL D  M+  F+D+P EWKY   M +LG+ P
Subjt:  ----KDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP

KAA0063789.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-2532.27Show/hide
Query:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGF-QNQIRKMMKERLP--GYN-----IVVSLNI-------ESKAKGLRNRPFPWFNELAL
        + SK  K  WT+ ED  L++CL+ LV+  GWR DN TF+ G+    I KMM+      G+N     I    ++        + A+GL N+ FP+F +L +
Subjt:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGF-QNQIRKMMKERLP--GYN-----IVVSLNI-------ESKAKGLRNRPFPWFNELAL

Query:  VFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVRKDEIKRNRQKELY
        VFG+D A   R +TP+++  +     + E+DM+++ ED  +P+P  + P S E++  TPT  A  AG SR S++RR   G++       E          
Subjt:  VFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVRKDEIKRNRQKELY

Query:  AEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP
                           +LL D  M+  F+D+P EWKY   M +LG+ P
Subjt:  AEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-2733.6Show/hide
Query:  SKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNRPFPWFNELALVFGKDSARGVRARTPIK
        SK  K  WT+ ED VL++CL+ LV+  GWR DNGTF+L +  Q           Y  +  +       G     F W  E         A G R +TP++
Subjt:  SKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNRPFPWFNELALVFGKDSARGVRARTPIK

Query:  LAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR-------------------KDEIKRNRQKE
        +  ++    + E+DM+++ ED  +P+P  ++P S E++  TPT  A  AG  R S++RR   G++ +  R                   K EI+ +  K 
Subjt:  LAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR-------------------KDEIKRNRQKE

Query:  LYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP
        LY E Q+IP + +DD L+VA +LL D  M+  F+D+P EWKY   M +LG+ P
Subjt:  LYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]2.3e-3336.33Show/hide
Query:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQ---IRKMMKERLPGYN-------IVVSLNI-------ESKAKGLRNRPFPWFNEL
        + SK  K  WT+ ED VL++CL+ LV+  GWR DNGTF+LG+  Q   I +MM     G+        I V   +          A+GL N+PFP+F +L
Subjt:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQ---IRKMMKERLPGYN-------IVVSLNI-------ESKAKGLRNRPFPWFNEL

Query:  ALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR-----------
         +VFG+D A G R +TP++++ ++    + E+DM+++ ED  +P+P  ++P S E++  TPT     AG SR S++RR   G++ +  R           
Subjt:  ALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR-----------

Query:  --------KDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFP
                K EI+ +  K LYAE Q+IP + +DD L+VA +LL D  M+  F+D+P
Subjt:  --------KDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFP

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]2.4e-2229.21Show/hide
Query:  SKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIES-----------------------------------
        SK  K  WT+ ED  L++CL+ LV+   WR DNGTF+ G+  Q++K+MKE++   NI V+ N+ES                                   
Subjt:  SKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIES-----------------------------------

Query:  ------------KAKGLRNRPFPWFNELALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSR
                     A+ L N+PFP+F +L +VFG+D A G + +TP+++  ++    + E+DM ++ ED  +P+P  ++P S E++  TPT  A  AG SR
Subjt:  ------------KAKGLRNRPFPWFNELALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSR

Query:  TSQRRRLSMGNMAEAVRKDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPE
         S++RR    ++ +  R  E                             +LL D  M+  F+D+P E
Subjt:  TSQRRRLSMGNMAEAVRKDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPE

TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein2.1e-3235.07Show/hide
Query:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNR-------------PFPWFNELALVF
        + SK  K  WT+  D VL++CL+ LV+  GWR DNGTF+LG+  Q++K+MKE++ G NI V+ N++S+ K L+ +              F W  E   + 
Subjt:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNR-------------PFPWFNELALVF

Query:  GKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR---------------
         + S         +K A + E     E+DM+++ ED  +P+P  ++P S E++  TPT  A  AG SR S++RR   G++ +  R               
Subjt:  GKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR---------------

Query:  ----KDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP
            K EI+ +  K LY + Q+IP + +DD L+VA +LL D  M+  F+D+P EWKY   M +LG+ P
Subjt:  ----KDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP

A0A5A7VE44 Retrotransposon protein1.1e-2532.27Show/hide
Query:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGF-QNQIRKMMKERLP--GYN-----IVVSLNI-------ESKAKGLRNRPFPWFNELAL
        + SK  K  WT+ ED  L++CL+ LV+  GWR DN TF+ G+    I KMM+      G+N     I    ++        + A+GL N+ FP+F +L +
Subjt:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGF-QNQIRKMMKERLP--GYN-----IVVSLNI-------ESKAKGLRNRPFPWFNELAL

Query:  VFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVRKDEIKRNRQKELY
        VFG+D A   R +TP+++  +     + E+DM+++ ED  +P+P  + P S E++  TPT  A  AG SR S++RR   G++       E          
Subjt:  VFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVRKDEIKRNRQKELY

Query:  AEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP
                           +LL D  M+  F+D+P EWKY   M +LG+ P
Subjt:  AEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP

A0A5A7VG45 Retrotransposon protein2.0e-2733.6Show/hide
Query:  SKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNRPFPWFNELALVFGKDSARGVRARTPIK
        SK  K  WT+ ED VL++CL+ LV+  GWR DNGTF+L +  Q           Y  +  +       G     F W  E         A G R +TP++
Subjt:  SKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNRPFPWFNELALVFGKDSARGVRARTPIK

Query:  LAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR-------------------KDEIKRNRQKE
        +  ++    + E+DM+++ ED  +P+P  ++P S E++  TPT  A  AG  R S++RR   G++ +  R                   K EI+ +  K 
Subjt:  LAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR-------------------KDEIKRNRQKE

Query:  LYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP
        LY E Q+IP + +DD L+VA +LL D  M+  F+D+P EWKY   M +LG+ P
Subjt:  LYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAP

A0A5D3C7T4 Uncharacterized protein1.1e-3336.33Show/hide
Query:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQ---IRKMMKERLPGYN-------IVVSLNI-------ESKAKGLRNRPFPWFNEL
        + SK  K  WT+ ED VL++CL+ LV+  GWR DNGTF+LG+  Q   I +MM     G+        I V   +          A+GL N+PFP+F +L
Subjt:  SGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQ---IRKMMKERLPGYN-------IVVSLNI-------ESKAKGLRNRPFPWFNEL

Query:  ALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR-----------
         +VFG+D A G R +TP++++ ++    + E+DM+++ ED  +P+P  ++P S E++  TPT     AG SR S++RR   G++ +  R           
Subjt:  ALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVR-----------

Query:  --------KDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFP
                K EI+ +  K LYAE Q+IP + +DD L+VA +LL D  M+  F+D+P
Subjt:  --------KDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFP

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein1.1e-2229.21Show/hide
Query:  SKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIES-----------------------------------
        SK  K  WT+ ED  L++CL+ LV+   WR DNGTF+ G+  Q++K+MKE++   NI V+ N+ES                                   
Subjt:  SKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIES-----------------------------------

Query:  ------------KAKGLRNRPFPWFNELALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSR
                     A+ L N+PFP+F +L +VFG+D A G + +TP+++  ++    + E+DM ++ ED  +P+P  ++P S E++  TPT  A  AG SR
Subjt:  ------------KAKGLRNRPFPWFNELALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSR

Query:  TSQRRRLSMGNMAEAVRKDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPE
         S++RR    ++ +  R  E                             +LL D  M+  F+D+P E
Subjt:  TSQRRRLSMGNMAEAVRKDEIKRNRQKELYAEQQSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATACCGGTTTTCATAAAGGTGATATAGGAGAAAAGGCTCGAAAGAGTGTATTCGGTGTTATAGGGACCTTCTTAATGATAGCATTGGGATCAGGATCCAAGAC
GGAGAAACTTGTTTGGACATCGGAGGAGGATGTAGTCCTTATGCAGTGCCTAGTCCACTTAGTACAAATAAGAGGTTGGCGCGGAGATAATGGGACATTTCGACTGGGAT
TCCAAAACCAGATCAGGAAGATGATGAAAGAACGACTGCCAGGCTACAACATAGTTGTCAGCCTGAATATTGAGTCCAAGGCTAAGGGCCTCCGTAACCGTCCATTCCCG
TGGTTTAATGAGTTGGCGCTGGTGTTTGGGAAGGACAGTGCAAGAGGGGTCAGAGCCCGCACTCCTATTAAGCTTGCACCAGAATCGGAACCGGTAGTCGACCTTGAAGA
GGACATGAACGTAGACTACGAAGATTGCTACGTCCCCAGTCCACTTGTTATTGATCCCATGTCAAGGGAAGAATTATGTGGGACACCGACTGGCAGAGCAGGTGGTGCAG
GACCGTCTAGGACATCGCAGAGGAGACGGTTGTCCATGGGGAACATGGCTGAGGCGGTGAGGAAGGATGAGATAAAGCGAAATCGTCAGAAGGAGTTGTATGCAGAGCAG
CAATCAATACCTAGAGTGTCTATGGATGACGACCTCGTGGTTGCATGGGCGTTACTTTCTGATGAGAACATGATTATCCACTTCATGGACTTCCCTCCAGAGTGGAAGTA
TGATTACTACATGGAAGTCCTTGGCAAGGCACCCAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAATACCGGTTTTCATAAAGGTGATATAGGAGAAAAGGCTCGAAAGAGTGTATTCGGTGTTATAGGGACCTTCTTAATGATAGCATTGGGATCAGGATCCAAGAC
GGAGAAACTTGTTTGGACATCGGAGGAGGATGTAGTCCTTATGCAGTGCCTAGTCCACTTAGTACAAATAAGAGGTTGGCGCGGAGATAATGGGACATTTCGACTGGGAT
TCCAAAACCAGATCAGGAAGATGATGAAAGAACGACTGCCAGGCTACAACATAGTTGTCAGCCTGAATATTGAGTCCAAGGCTAAGGGCCTCCGTAACCGTCCATTCCCG
TGGTTTAATGAGTTGGCGCTGGTGTTTGGGAAGGACAGTGCAAGAGGGGTCAGAGCCCGCACTCCTATTAAGCTTGCACCAGAATCGGAACCGGTAGTCGACCTTGAAGA
GGACATGAACGTAGACTACGAAGATTGCTACGTCCCCAGTCCACTTGTTATTGATCCCATGTCAAGGGAAGAATTATGTGGGACACCGACTGGCAGAGCAGGTGGTGCAG
GACCGTCTAGGACATCGCAGAGGAGACGGTTGTCCATGGGGAACATGGCTGAGGCGGTGAGGAAGGATGAGATAAAGCGAAATCGTCAGAAGGAGTTGTATGCAGAGCAG
CAATCAATACCTAGAGTGTCTATGGATGACGACCTCGTGGTTGCATGGGCGTTACTTTCTGATGAGAACATGATTATCCACTTCATGGACTTCCCTCCAGAGTGGAAGTA
TGATTACTACATGGAAGTCCTTGGCAAGGCACCCAGATAG
Protein sequenceShow/hide protein sequence
MNNTGFHKGDIGEKARKSVFGVIGTFLMIALGSGSKTEKLVWTSEEDVVLMQCLVHLVQIRGWRGDNGTFRLGFQNQIRKMMKERLPGYNIVVSLNIESKAKGLRNRPFP
WFNELALVFGKDSARGVRARTPIKLAPESEPVVDLEEDMNVDYEDCYVPSPLVIDPMSREELCGTPTGRAGGAGPSRTSQRRRLSMGNMAEAVRKDEIKRNRQKELYAEQ
QSIPRVSMDDDLVVAWALLSDENMIIHFMDFPPEWKYDYYMEVLGKAPR