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Spg003877 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003877
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold8:21948805..21953326
RNA-Seq ExpressionSpg003877
SyntenySpg003877
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.7e-0571.05Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+ IHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG

KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]4.2e-0661.36Show/hide
Query:  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDES
        +VRVA  PTQYA+ FGDKT+W AG++ TQ+EIHSF  LG +  S
Subjt:  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDES

KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0552.54Show/hide
Query:  VNSGQLWSFGAISVFLDARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEV
        V  G L S G      D  +RVA  PTQYA+ F DKTEW AG++ TQ+ IHSFP LG +
Subjt:  VNSGQLWSFGAISVFLDARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEV

KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.1e-0671.79Show/hide
Query:  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG
        +VRVA  PTQYA+ FGDKTEW AG++ TQ+ IHSFPLLG
Subjt:  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG

TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]4.7e-0560Show/hide
Query:  DARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDE
        D  +RVA  PTQYA+ F DKTEW AG++ TQ+ IH FP LG VD+
Subjt:  DARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDE

TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.3e-0571.05Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+ IHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG

A0A5A7THR9 Uncharacterized protein2.1e-0661.36Show/hide
Query:  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDES
        +VRVA  PTQYA+ FGDKT+W AG++ TQ+EIHSF  LG +  S
Subjt:  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDES

A0A5A7TKJ4 Gag/pol protein6.0e-0652.54Show/hide
Query:  VNSGQLWSFGAISVFLDARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEV
        V  G L S G      D  +RVA  PTQYA+ F DKTEW AG++ TQ+ IHSFP LG +
Subjt:  VNSGQLWSFGAISVFLDARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEV

A0A5A7VFG5 Ty1-copia retrotransposon protein5.4e-0771.79Show/hide
Query:  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG
        +VRVA  PTQYA+ FGDKTEW AG++ TQ+ IHSFPLLG
Subjt:  RVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLG

A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-942.3e-0560Show/hide
Query:  DARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDE
        D  +RVA  PTQYA+ F DKTEW AG++ TQ+ IH FP LG VD+
Subjt:  DARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACTTCGAGCTTAGGCGATGTCGGGA
GCCAGCCACGCAAATTGGTGTTAATTCGGGCCAATTATGGAGTTTTGGAGCCATCTCGGTGTTCTTGGACGCACGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCT
TCCTTTTTGGGGATAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGAAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTCTGTGATTACGAACACT
CGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAATGAGAAGAGTTCAGCTGGTAGCCTCGTGGTGGTGTCCGTTGAAGTATTCAG
AGTCGTCAACGGAGCGTCGGGACGCTGTGCCTTCAACGTCTCGAAGCTGGCGACAATGCGGTCAATTACGCGTGAGGTGGTTAGCGGCCCGGTTCATGATGGTTCGGTCC
GGTTCTCTGAGCAGTTGGTCTGGTTCGAGAGTTGTGGTTCCGGTTTGGGCCATTCTGACACGGTTTGGGCTTGTTTTGAGCGGTTCGAGGCGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACTTCGAGCTTAGGCGATGTCGGGA
GCCAGCCACGCAAATTGGTGTTAATTCGGGCCAATTATGGAGTTTTGGAGCCATCTCGGTGTTCTTGGACGCACGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCT
TCCTTTTTGGGGATAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGAAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTCTGTGATTACGAACACT
CGTGAAGGATTGACTTACCGGCATAGGTCTACATCCATGGACACAGAAATGTTCTACAATGAGAAGAGTTCAGCTGGTAGCCTCGTGGTGGTGTCCGTTGAAGTATTCAG
AGTCGTCAACGGAGCGTCGGGACGCTGTGCCTTCAACGTCTCGAAGCTGGCGACAATGCGGTCAATTACGCGTGAGGTGGTTAGCGGCCCGGTTCATGATGGTTCGGTCC
GGTTCTCTGAGCAGTTGGTCTGGTTCGAGAGTTGTGGTTCCGGTTTGGGCCATTCTGACACGGTTTGGGCTTGTTTTGAGCGGTTCGAGGCGGTTTAG
Protein sequenceShow/hide protein sequence
MSPTWMLWIIASVSNTRWAVSHSVTRIRYFELRRCREPATQIGVNSGQLWSFGAISVFLDARVRVANTPTQYAFLFGDKTEWEAGDMTTQEEIHSFPLLGEVDESVITNT
REGLTYRHRSTSMDTEMFYNEKSSAGSLVVVSVEVFRVVNGASGRCAFNVSKLATMRSITREVVSGPVHDGSVRFSEQLVWFESCGSGLGHSDTVWACFERFEAV