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Spg003882 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003882
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold8:22389148..22391391
RNA-Seq ExpressionSpg003882
SyntenySpg003882
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-1248.6Show/hide
Query:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSSIEY------AFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGG
        PL TLSV  DND VVEI+ PV D LPTSAES  S+S  +      +   + +++LF KPS VRAA+ VC  EG    +  DDV   HA+F+ K   GP G
Subjt:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSSIEY------AFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGG

Query:  GVTIGVH
        GVT   H
Subjt:  GVTIGVH

KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-1660Show/hide
Query:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSS---IEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT
        PL TLSVLRDND VVEI+ P+PDTLPTSAESS S+S   +E  F       LF KPS  RAA+ VC  EG    +  DDV   HAIFR K A GPGGGVT
Subjt:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSS---IEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]7.2e-1456.57Show/hide
Query:  LLTLSVLRDNDTVVEIQHPVPDTLPTSAE---SSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT
        L TLSVL DN+ VVEI+ PVPDTLPTSAE   S+SS+ +E  F       LF KPS VRAA+ VC  EG    +  DDV   H +FR K+A GPGGGVT
Subjt:  LLTLSVLRDNDTVVEIQHPVPDTLPTSAE---SSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.3e-1457Show/hide
Query:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSA---ESSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT
        PL TLSVLRDN+ VVEI+ PVPDTLPTSA   ES+SS+ +E          LF KPS VRAA+ VC  EG    +  DDV   HA+FR K A GP GGVT
Subjt:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSA---ESSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-1660Show/hide
Query:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSS---IEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT
        PL TLSVLRDND VVEI+ P+PDTLPTSAESS S+S   +E  F       LF KPS  RAA+ VC  EG    +  DDV   HAIFR K A GPGGGVT
Subjt:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSS---IEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.3e-1660Show/hide
Query:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSS---IEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT
        PL TLSVLRDND VVEI+ P+PDTLPTSAESS S+S   +E  F       LF KPS  RAA+ VC  EG    +  DDV   HAIFR K A GPGGGVT
Subjt:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSS---IEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT

A0A5A7VIY9 Uncharacterized protein3.5e-1456.57Show/hide
Query:  LLTLSVLRDNDTVVEIQHPVPDTLPTSAE---SSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT
        L TLSVL DN+ VVEI+ PVPDTLPTSAE   S+SS+ +E  F       LF KPS VRAA+ VC  EG    +  DDV   H +FR K+A GPGGGVT
Subjt:  LLTLSVLRDNDTVVEIQHPVPDTLPTSAE---SSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT

A0A5D3C867 DNA/RNA polymerases superfamily protein1.1e-1248.6Show/hide
Query:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSSIEY------AFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGG
        PL TLSV  DND VVEI+ PV D LPTSAES  S+S  +      +   + +++LF KPS VRAA+ VC  EG    +  DDV   HA+F+ K   GP G
Subjt:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSSIEY------AFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGG

Query:  GVTIGVH
        GVT   H
Subjt:  GVTIGVH

A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.1e-1457Show/hide
Query:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSA---ESSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT
        PL TLSVLRDN+ VVEI+ PVPDTLPTSA   ES+SS+ +E          LF KPS VRAA+ VC  EG    +  DDV   HA+FR K A GP GGVT
Subjt:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSA---ESSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT

A0A5D3DR18 Gag/pol protein1.3e-1660Show/hide
Query:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSS---IEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT
        PL TLSVLRDND VVEI+ P+PDTLPTSAESS S+S   +E  F       LF KPS  RAA+ VC  EG    +  DDV   HAIFR K A GPGGGVT
Subjt:  PLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSS---IEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDV--RHAIFRTKLASGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGCGGGATCCCTTTGTTCAAGCCTCAGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTGAAACGGGTAGGAGTGAATTCCATCTTGCAGGACTATGT
CCCCAGCTGTCTACCCGGTCTCATCCCCAAAATGTTAATGGTTTTTGAAATGGAAAACAGAGCACAAAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTTTGGTTT
TTCGAGCTTTTTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGAATTCATGAGCTGGAACGACAAAACTACTTATGGTTCTAATGCTCGGTTTCGGTTGTTTGACAAG
CCAAGAGGAAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATACTGTCGTAGAGATCCAGCACCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAG
TTCCAGTTCAAGCTCCATTGAATATGCTTTTGGTTGTGATACCTATATCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCAACTCGTGTATGTTTACAGGAGGGTC
AACGGGTAACGTTAGAGGACGACGATGTCCGTCACGCCATCTTCCGGACTAAGCTAGCAAGTGGTCCGGGAGGGGGTGTGACAATAGGAGTTCATAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGCGGGATCCCTTTGTTCAAGCCTCAGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTGAAACGGGTAGGAGTGAATTCCATCTTGCAGGACTATGT
CCCCAGCTGTCTACCCGGTCTCATCCCCAAAATGTTAATGGTTTTTGAAATGGAAAACAGAGCACAAAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTTTGGTTT
TTCGAGCTTTTTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGAATTCATGAGCTGGAACGACAAAACTACTTATGGTTCTAATGCTCGGTTTCGGTTGTTTGACAAG
CCAAGAGGAAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATACTGTCGTAGAGATCCAGCACCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAG
TTCCAGTTCAAGCTCCATTGAATATGCTTTTGGTTGTGATACCTATATCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCAACTCGTGTATGTTTACAGGAGGGTC
AACGGGTAACGTTAGAGGACGACGATGTCCGTCACGCCATCTTCCGGACTAAGCTAGCAAGTGGTCCGGGAGGGGGTGTGACAATAGGAGTTCATAATTAG
Protein sequenceShow/hide protein sequence
MRGRDPFVQASESALKGTTSLLSLKRVGVNSILQDYVPSCLPGLIPKMLMVFEMENRAQNFRANQEDLWFSLVFRAFWGVQVESEALFEFMSWNDKTTYGSNARFRLFDK
PRGSYIPLLTLSVLRDNDTVVEIQHPVPDTLPTSAESSSSSSIEYAFGCDTYIQLFSKPSYVRAATRVCLQEGQRVTLEDDDVRHAIFRTKLASGPGGGVTIGVHN