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Spg003888 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003888
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:21998146..21999455
RNA-Seq ExpressionSpg003888
SyntenySpg003888
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1151.58Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+ ++   +            + EDDVCWLHA+   K AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAG

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-0956.98Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAG
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES RS+S SA I +G       DDVCWLHAI   K AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAG

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]5.3e-0955.42Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTK
        +TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+S SA I +G       DDVCWLH +   K
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTK

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.2e-0853.57Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLA
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S SA        +  DDVCWLH++   K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLA

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1151.58Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+ ++   +            + EDDVCWLHA+   K AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase9.4e-1251.58Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+ ++   +            + EDDVCWLHA+   K AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAG

A0A5D3BP54 Gag/pol protein2.6e-0956.98Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAG
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES RS+S SA I +G       DDVCWLHAI   K AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAG

A0A5D3CIF4 Gag protease polyprotein2.6e-0955.42Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTK
        +TEILS RLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+S SA I +G       DDVCWLH +   K
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTK

A0A5D3CU23 Retrotrans_gag domain-containing protein5.7e-0953.57Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLA
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S SA        +  DDVCWLH++   K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLA

A0A5D3DX39 Reverse transcriptase9.4e-1251.58Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+ ++   +            + EDDVCWLHA+   K AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGAAAAAGGTCTTCGCCTT
TACTATATATAGAACCCCAGGGGTGGGGTGAAAAGCATCTCATTGTCTCTCCTTCTCTCAAAGATCTCTCCCAAAAGACTCCCACAAGTCTCTTGCTTCAAGAAGTCTTA
GAGTCATACCAGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCAAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGAAAAAGGTCTTCGCCTT
TACTATATATAGAACCCCAGGGGTGGGGTGAAAAGCATCTCATTGTCTCTCCTTCTCTCAAAGATCTCTCCCAAAAGACTCCCACAAGTCTCTTGCTTCAAGAAGTCTTA
GAGTCATACCAGTGTAGCCATAGTGGTGGTGTTCGCACTAGTTCGTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLAGKRSSPLLYIEPQGWGEKHLIVSPSLKDLSQKTPTSLLLQEVL
ESYQCSHSGGVRTSS