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Spg003889 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003889
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:22998050..22999870
RNA-Seq ExpressionSpg003889
SyntenySpg003889
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-1385.71Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-1383.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]7.7e-1383.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.0e-1385.71Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-1383.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.7e-1383.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
A0A5A7V9N3 Reverse transcriptase9.8e-1485.71Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
A0A5A7VMG9 Reverse transcriptase2.2e-1383.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
A0A5D3DSY7 Putative Retrotransposon protein9.8e-1485.71Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
A0A5D3DX39 Reverse transcriptase2.2e-1383.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGCAAGACACCCACCACCACTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGA
AGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGACAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTTATATTCCGTTGTTGACGT
TGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAG
TTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGCAAGACACCCACCACCACTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGA
AGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGACAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTTATATTCCGTTGTTGACGT
TGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAG
TTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MEMDSKTPTTTSPIISPISHLFPPKLSEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNCYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVE
LYIESVHIVNVL