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Spg003901 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003901
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:23270850..23280558
RNA-Seq ExpressionSpg003901
SyntenySpg003901
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032146.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-1565.28Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLE
        MS++   GK   +RLVEIEEQ+LYL EVPDS+RY+ESR+DEISEK   IDAV  R++GLP+QEL  RV+TLE
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLE

KAA0065910.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]9.8e-1768.49Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLES
        MS+    GK+  +RLVEIEEQ+LYL EVPDS+RY+ESRLDEISEK+  IDAV  RI+GLP+QEL  RVETLE+
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLES

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]2.8e-2476.92Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKP
        MS TKQ+ K+HV+RLVEIEEQLLYLREVPD +R +E+R+DE SEK GEIDAVNARIDGLP+Q++A+RVETLESKAT+P
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKP

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]9.8e-2576.92Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKP
        MSATKQ+ K+HV+RLVEIEEQLLYLREVPDS+R +E+R+DE SEK GEIDAVNAR+DGLP+Q++A+RVET ESKAT+P
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKP

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]5.5e-2068.83Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATK
        MS TKQ+GK+H++RLVEIEE+LL+LRE+PD++RYVESRLDEIS K   ID VNARIDGL ++EL +RVETLE K  +
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATK

TrEMBL top hitse value%identityAlignment
A0A5A7VFC8 Senescence-specific cysteine protease sag394.7e-1768.49Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLES
        MS+    GK+  +RLVEIEEQ+LYL EVPDS+RY+ESRLDEISEK+  IDAV  RI+GLP+QEL  RVETLE+
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLES

A0A5D3CRH9 Ty3-gypsy retrotransposon protein1.2e-1565.28Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLE
        MS++   GK   +RLVEIEEQ+LYL EVPDS+RY+ESR+DEISEK   IDAV  R++GLP+QEL  RV+TLE
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLE

A0A6J1D906 Reverse transcriptase1.4e-2476.92Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKP
        MS TKQ+ K+HV+RLVEIEEQLLYLREVPD +R +E+R+DE SEK GEIDAVNARIDGLP+Q++A+RVETLESKAT+P
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKP

A0A6J1DK29 uncharacterized protein LOC1110218294.7e-2576.92Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKP
        MSATKQ+ K+HV+RLVEIEEQLLYLREVPDS+R +E+R+DE SEK GEIDAVNAR+DGLP+Q++A+RVET ESKAT+P
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKP

A0A6J1DLQ6 uncharacterized protein LOC1110223202.7e-2068.83Show/hide
Query:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATK
        MS TKQ+GK+H++RLVEIEE+LL+LRE+PD++RYVESRLDEIS K   ID VNARIDGL ++EL +RVETLE K  +
Subjt:  MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGACCAAACAAATGGGCAAGACCCACGTTGAGCGACTCGTTGAGATAGAGGAACAGTTGCTGTATTTGAGGGAAGTACCTGACTCGGTACGATACGTCGAAAG
TCGACTTGATGAGATCTCTGAAAAGTTGGGCGAGATAGATGCAGTGAATGCCCGAATTGATGGGCTACCTGTACAAGAGTTGGCAATAAGGGTAGAGACCCTGGAAAGCA
AAGCTACAAAGCCTGTTTTGGAGGCATTTAGCAAACTGCTCGTTTCCTGCCCCAGTTTGAACTCTCGGGGTACTGGATCCCCTTTCAGATTGACCCTGGGTAGGATCCTG
TGTCCTGTCCTGATTCTGCCTGCGTCGTCTGCTGGCGTAGTGTCGCGACGCTATCCCATTTCCAGAACATTCTCGCGCGGCTCCCCAAACTTGGATGCAAATGGCCCTAT
TGTCTTGGGCTCCAAGTCGTCGCAGCGTCGCGACGCTGTCCCATTTCCAGAACATTCTCGCGTGGCTGCCCAGCGTCGAGATGCTTCGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGACCAAACAAATGGGCAAGACCCACGTTGAGCGACTCGTTGAGATAGAGGAACAGTTGCTGTATTTGAGGGAAGTACCTGACTCGGTACGATACGTCGAAAG
TCGACTTGATGAGATCTCTGAAAAGTTGGGCGAGATAGATGCAGTGAATGCCCGAATTGATGGGCTACCTGTACAAGAGTTGGCAATAAGGGTAGAGACCCTGGAAAGCA
AAGCTACAAAGCCTGTTTTGGAGGCATTTAGCAAACTGCTCGTTTCCTGCCCCAGTTTGAACTCTCGGGGTACTGGATCCCCTTTCAGATTGACCCTGGGTAGGATCCTG
TGTCCTGTCCTGATTCTGCCTGCGTCGTCTGCTGGCGTAGTGTCGCGACGCTATCCCATTTCCAGAACATTCTCGCGCGGCTCCCCAAACTTGGATGCAAATGGCCCTAT
TGTCTTGGGCTCCAAGTCGTCGCAGCGTCGCGACGCTGTCCCATTTCCAGAACATTCTCGCGTGGCTGCCCAGCGTCGAGATGCTTCGGCCTAG
Protein sequenceShow/hide protein sequence
MSATKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATKPVLEAFSKLLVSCPSLNSRGTGSPFRLTLGRIL
CPVLILPASSAGVVSRRYPISRTFSRGSPNLDANGPIVLGSKSSQRRDAVPFPEHSRVAAQRRDASA