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Spg003917 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003917
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionclassical arabinogalactan protein 1-like
Genome locationscaffold4:1029482..1029820
RNA-Seq ExpressionSpg003917
SyntenySpg003917
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3974006.1 hypothetical protein CMV_002619 [Castanea mollissima]4.9e-0650.91Show/hide
Query:  ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYL
        +S+ I +LA++V+  I  + A SP  SPKKSP A+SP          H SAPSPAT K P   SPSPA +PSSIS PP++APAPA N AVS++  +AG +
Subjt:  ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYL

Query:  FAAVSVAAFL
         A V+ A FL
Subjt:  FAAVSVAAFL

PQQ16428.1 classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora]1.7e-0647.15Show/hide
Query:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSP-----HAASPSPTPHSPKVS-------HKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATN
        MA     VL LM    + ST AQSP+ SP KSP     HAA+PSP+   PK S         +APS +   PP+AS  SPA+ PSS+S PP++APAPATN
Subjt:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSP-----HAASPSPTPHSPKVS-------HKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATN

Query:  NAVSSTVTVAGYL----FAAVSV
         AV +  + AG++    FAAV V
Subjt:  NAVSSTVTVAGYL----FAAVSV

XP_011659718.1 classical arabinogalactan protein 10 [Cucumis sativus]1.1e-1056.9Show/hide
Query:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPH-SPKVSHKSAPSPATAKPPTASSPSPAVSP-SSISSPPADAPAPAT--NNAVSSTVT
        MAS+ IT++AL  LF ITST AQSP+PSPKKS H  S SP+PH SP +SHKS  SP         SPSP+ SP +S S PPA+A APA   N+A+++T  
Subjt:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPH-SPKVSHKSAPSPATAKPPTASSPSPAVSP-SSISSPPADAPAPAT--NNAVSSTVT

Query:  VAGYLFAAVSVAAFLF
        V+  LF AVS AAFLF
Subjt:  VAGYLFAAVSVAAFLF

XP_022141985.1 classical arabinogalactan protein 1-like [Momordica charantia]8.9e-1666.67Show/hide
Query:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAK----PPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVT
        MASVR TVLALM L  ITS  AQ    SPKK  HAASPSP   SP+VS KSAPSPAT K     P +SSPSPA+ PSSISSPPADAPA A N A S++  
Subjt:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAK----PPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVT

Query:  VAGYLFAA
        VAG LFAA
Subjt:  VAGYLFAA

XP_030942551.1 classical arabinogalactan protein 1-like [Quercus lobata]1.9e-0550Show/hide
Query:  ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYL
        +S+ I +LA++V+  I  + A SP  SPKKSP A SP          H SAPSPAT K P   SPSP  +PSSIS PP++APAPA N AVS++  +AG +
Subjt:  ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYL

Query:  FAAVSVAAFL
         A V+ A FL
Subjt:  FAAVSVAAFL

TrEMBL top hitse value%identityAlignment
A0A0A0K7F2 Uncharacterized protein5.5e-1156.9Show/hide
Query:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPH-SPKVSHKSAPSPATAKPPTASSPSPAVSP-SSISSPPADAPAPAT--NNAVSSTVT
        MAS+ IT++AL  LF ITST AQSP+PSPKKS H  S SP+PH SP +SHKS  SP         SPSP+ SP +S S PPA+A APA   N+A+++T  
Subjt:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPH-SPKVSHKSAPSPATAKPPTASSPSPAVSP-SSISSPPADAPAPAT--NNAVSSTVT

Query:  VAGYLFAAVSVAAFLF
        V+  LF AVS AAFLF
Subjt:  VAGYLFAAVSVAAFLF

A0A314ZGT3 Classical arabinogalactan protein 18.2e-0747.15Show/hide
Query:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSP-----HAASPSPTPHSPKVS-------HKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATN
        MA     VL LM    + ST AQSP+ SP KSP     HAA+PSP+   PK S         +APS +   PP+AS  SPA+ PSS+S PP++APAPATN
Subjt:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSP-----HAASPSPTPHSPKVS-------HKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATN

Query:  NAVSSTVTVAGYL----FAAVSV
         AV +  + AG++    FAAV V
Subjt:  NAVSSTVTVAGYL----FAAVSV

A0A5A7V5Q9 Classical arabinogalactan protein 1-like2.0e-0548.31Show/hide
Query:  SVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPP-----------TASSPSPAVSPSSISSPPADAPAPATNNAV
        ++R  V  ++V F I S  AQSP+ SP K+P   S SP+  SPK S   AP+P++ K P            +SSPSPA SPSSISSPPADAPAP+ N A 
Subjt:  SVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPP-----------TASSPSPAVSPSSISSPPADAPAPATNNAV

Query:  SSTVTVAGYLFAAVSVAA
        S T +V G   AAV++ A
Subjt:  SSTVTVAGYLFAAVSVAA

A0A6J1CJM5 classical arabinogalactan protein 1-like4.3e-1666.67Show/hide
Query:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAK----PPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVT
        MASVR TVLALM L  ITS  AQ    SPKK  HAASPSP   SP+VS KSAPSPAT K     P +SSPSPA+ PSSISSPPADAPA A N A S++  
Subjt:  MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAK----PPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVT

Query:  VAGYLFAA
        VAG LFAA
Subjt:  VAGYLFAA

A0A7N2MWF4 Uncharacterized protein9.1e-0650Show/hide
Query:  ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYL
        +S+ I +LA++V+  I  + A SP  SPKKSP A SP          H SAPSPAT K P   SPSP  +PSSIS PP++APAPA N AVS++  +AG +
Subjt:  ASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYL

Query:  FAAVSVAAFL
         A V+ A FL
Subjt:  FAAVSVAAFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTACGCATCACAGTTCTGGCGCTAATGGTTCTCTTCTTCATCACCTCCACGGTGGCTCAATCTCCATCGCCGTCGCCAAAGAAATCTCCGCATGCAGCCTC
TCCCTCGCCGACGCCCCATTCCCCGAAGGTTTCTCACAAATCGGCGCCGTCGCCGGCCACCGCTAAGCCTCCTACCGCCTCTTCGCCGTCACCGGCCGTTTCGCCATCCT
CCATCTCCTCCCCTCCCGCCGACGCTCCTGCTCCTGCCACTAACAATGCTGTTTCCTCTACTGTCACCGTCGCTGGTTATCTTTTCGCCGCCGTCTCCGTCGCTGCTTTC
CTCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGTACGCATCACAGTTCTGGCGCTAATGGTTCTCTTCTTCATCACCTCCACGGTGGCTCAATCTCCATCGCCGTCGCCAAAGAAATCTCCGCATGCAGCCTC
TCCCTCGCCGACGCCCCATTCCCCGAAGGTTTCTCACAAATCGGCGCCGTCGCCGGCCACCGCTAAGCCTCCTACCGCCTCTTCGCCGTCACCGGCCGTTTCGCCATCCT
CCATCTCCTCCCCTCCCGCCGACGCTCCTGCTCCTGCCACTAACAATGCTGTTTCCTCTACTGTCACCGTCGCTGGTTATCTTTTCGCCGCCGTCTCCGTCGCTGCTTTC
CTCTTCTAG
Protein sequenceShow/hide protein sequence
MASVRITVLALMVLFFITSTVAQSPSPSPKKSPHAASPSPTPHSPKVSHKSAPSPATAKPPTASSPSPAVSPSSISSPPADAPAPATNNAVSSTVTVAGYLFAAVSVAAF
LF