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Spg003925 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003925
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionclassical arabinogalactan protein 4
Genome locationscaffold4:2835053..2835502
RNA-Seq ExpressionSpg003925
SyntenySpg003925
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462882.1 PREDICTED: classical arabinogalactan protein 4 [Cucumis melo]9.1e-0845.16Show/hide
Query:  MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQSPPQ---TKPSTPPSSSPAPAP--------------SPTP
        M  S LLN L  A LL+SAAA SP PSP P +A SP W+WTP  +P        PP +T SPP    + P+TPP  SP P+               SPT 
Subjt:  MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQSPPQ---TKPSTPPSSSPAPAP--------------SPTP

Query:  VPPA--SPHHAPS-----APPASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAM
         PPA  SP HAPS     AP  +P   SP+P+  P     P   PPS  G      PSEAPAPSKE + A +NRF I GS+A G M
Subjt:  VPPA--SPHHAPS-----APPASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAM

XP_011659717.1 vegetative cell wall protein gp1 [Cucumis sativus]2.1e-2058.78Show/hide
Query:  MPHSALLNALLAAALLLSAAAL--SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPS
        MPHS LLNALLAAALL SAAA+  SP+PSPTP A+ SPPWRW P+TKPP        +T+PSTPP       PSPT VPP + H  P  P A P   SPS
Subjt:  MPHSALLNALLAAALLLSAAAL--SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPS

Query:  PSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA
        PS        P+WI  PPSEA +PSK KS+ F N F++VGSVAIGAMA
Subjt:  PSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA

XP_022141995.1 extensin-like [Momordica charantia]7.2e-2161.7Show/hide
Query:  LAAALLLSAAAL-SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSD
        +AAALL SAAA   P PSP+P A PSPPWRWTP  KPP P T S P   P   P SSPAP+PSPT   VPPA P  AP +PP  P  QSP+P  + PP+ 
Subjt:  LAAALLLSAAAL-SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSD

Query:  LP-PSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA
         P PSWI GPP++A APSK KSNA  NRF++VGSV IGAMA
Subjt:  LP-PSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA

XP_038877309.1 vegetative cell wall protein gp1-like [Benincasa hispida]2.3e-0644.32Show/hide
Query:  MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKPP-------PPSTQSPPQ---TKPSTPPSSSPAP---AP-----------SPTPV
        M  S +L  L  A LL+SAAA SP PSP P    SP W+WTP  +PP       PP T SPP    + P+TPP  SP P   AP           SPT  
Subjt:  MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKPP-------PPSTQSPPQ---TKPSTPPSSSPAP---AP-----------SPTPV

Query:  PPA--SPHHAPS-----APPASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAM
        PP   SP HAPS     AP  +P   SPSP+  P     P+  PPS  G      PS APAPSK+ +   +NRF I GSVA+G M
Subjt:  PPA--SPHHAPS-----APPASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAM

XP_038887113.1 anther-specific proline-rich protein APG-like [Benincasa hispida]6.1e-2867.76Show/hide
Query:  MPHSALLNALLAAALLLSAAAL-SPTPSP----TPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQ
        MPHSALLNALLAAALL SAAA  +P PSP    TP A+PSPPWRWTP+TKPPP ST S  ++KP TPP SSP P PSPTPV P   HHAP+  P S PLQ
Subjt:  MPHSALLNALLAAALLLSAAAL-SPTPSP----TPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQ

Query:  -SPSPSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA
         SPSPS  P     PSWI  PP EAPAPSK KS+AF+NRF++V SVAI AMA
Subjt:  -SPSPSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA

TrEMBL top hitse value%identityAlignment
A0A0A0K238 Uncharacterized protein1.0e-2058.78Show/hide
Query:  MPHSALLNALLAAALLLSAAAL--SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPS
        MPHS LLNALLAAALL SAAA+  SP+PSPTP A+ SPPWRW P+TKPP        +T+PSTPP       PSPT VPP + H  P  P A P   SPS
Subjt:  MPHSALLNALLAAALLLSAAAL--SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPS

Query:  PSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA
        PS        P+WI  PPSEA +PSK KS+ F N F++VGSVAIGAMA
Subjt:  PSSIPPSDLPPSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA

A0A1S3CHW9 classical arabinogalactan protein 44.4e-0845.16Show/hide
Query:  MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQSPPQ---TKPSTPPSSSPAPAP--------------SPTP
        M  S LLN L  A LL+SAAA SP PSP P +A SP W+WTP  +P        PP +T SPP    + P+TPP  SP P+               SPT 
Subjt:  MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQSPPQ---TKPSTPPSSSPAPAP--------------SPTP

Query:  VPPA--SPHHAPS-----APPASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAM
         PPA  SP HAPS     AP  +P   SP+P+  P     P   PPS  G      PSEAPAPSKE + A +NRF I GS+A G M
Subjt:  VPPA--SPHHAPS-----APPASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAM

A0A5A7V3Q7 Classical arabinogalactan protein 44.4e-0845.16Show/hide
Query:  MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQSPPQ---TKPSTPPSSSPAPAP--------------SPTP
        M  S LLN L  A LL+SAAA SP PSP P +A SP W+WTP  +P        PP +T SPP    + P+TPP  SP P+               SPT 
Subjt:  MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKP--------PPPSTQSPPQ---TKPSTPPSSSPAPAP--------------SPTP

Query:  VPPA--SPHHAPS-----APPASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAM
         PPA  SP HAPS     AP  +P   SP+P+  P     P   PPS  G      PSEAPAPSKE + A +NRF I GS+A G M
Subjt:  VPPA--SPHHAPS-----APPASPPLQSPSPSSIP-----PSDLPPSWIG----GPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAM

A0A6J1CJN4 extensin-like3.5e-2161.7Show/hide
Query:  LAAALLLSAAAL-SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSD
        +AAALL SAAA   P PSP+P A PSPPWRWTP  KPP P T S P   P   P SSPAP+PSPT   VPPA P  AP +PP  P  QSP+P  + PP+ 
Subjt:  LAAALLLSAAAL-SPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTP--VPPASPHHAPSAPPASPPLQSPSPS-SIPPSD

Query:  LP-PSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA
         P PSWI GPP++A APSK KSNA  NRF++VGSV IGAMA
Subjt:  LP-PSWIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMA

A0A7J7PQK5 Uncharacterized protein3.2e-0651.89Show/hide
Query:  SPTPSPTPQAAPSPPWRWTPVTKPPP-PSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSEAPA
        SP+PSP+P  +PSPP   +P   PPP PS   PP   PS PPS SP+P+PSP+P PP SP  +PS PP+  P  SPSPS  PP    PS    PPS +P+
Subjt:  SPTPSPTPQAAPSPPWRWTPVTKPPP-PSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPSWIGGPPSEAPA

Query:  PSKEKS
        PS   S
Subjt:  PSKEKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACACTCAGCGCTTCTCAACGCCCTGTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGACACCGTCGCCAACACCGCAGGCCGCCCCTTCGCCGCC
CTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCTCAACACAGTCGCCGCCTCAGACAAAGCCCAGCACTCCACCGTCGTCGTCTCCGGCACCGGCACCGTCGCCCA
CCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCTATTCCGCCGTCCGACCTACCTCCGTCG
TGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTCACGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTT
AATGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACACTCAGCGCTTCTCAACGCCCTGTTGGCGGCGGCGCTGCTCCTCTCCGCCGCCGCTCTCTCGCCGACACCGTCGCCAACACCGCAGGCCGCCCCTTCGCCGCC
CTGGAGATGGACCCCCGTCACAAAGCCTCCTCCACCCTCAACACAGTCGCCGCCTCAGACAAAGCCCAGCACTCCACCGTCGTCGTCTCCGGCACCGGCACCGTCGCCCA
CCCCAGTTCCGCCGGCATCGCCACACCATGCACCGAGTGCACCTCCAGCTTCCCCGCCGCTGCAGAGCCCTTCTCCGTCGTCTATTCCGCCGTCCGACCTACCTCCGTCG
TGGATCGGCGGTCCGCCGTCGGAAGCACCGGCGCCATCGAAAGAGAAGAGCAACGCCTTTAGTAACAGATTCACGATCGTTGGATCGGTGGCTATTGGAGCCATGGCTTT
AATGGTTTAA
Protein sequenceShow/hide protein sequence
MPHSALLNALLAAALLLSAAALSPTPSPTPQAAPSPPWRWTPVTKPPPPSTQSPPQTKPSTPPSSSPAPAPSPTPVPPASPHHAPSAPPASPPLQSPSPSSIPPSDLPPS
WIGGPPSEAPAPSKEKSNAFSNRFTIVGSVAIGAMALMV