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Spg003949 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003949
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationscaffold4:2395526..2397958
RNA-Seq ExpressionSpg003949
SyntenySpg003949
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR044981 - Lysine-rich arabinogalactan protein AGP9/17/18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571935.1 hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4379.58Show/hide
Query:  MDRQALLCLSLICIVFAGAGAQSPASPPT--------------ATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPAS----
        MD QAL CL+LI I FA AGAQ P+SPPT              ATPPPVSAPPPATPPPATPPPA+PPPATPPPA+PPPATPPPASPPPATPPPAS    
Subjt:  MDRQALLCLSLICIVFAGAGAQSPASPPT--------------ATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPAS----

Query:  -PPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG
         PPPASPPPA+PPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKK KAAP P+P+SSPP PSAE PGPAG +SPTPSQNDN G
Subjt:  -PPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG

KAG7011623.1 hypothetical protein SDJN02_26529, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-3687.42Show/hide
Query:  PPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPAS-----PPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASP
        P +ATPPPVSAPPPATPPPATPPPA+PPPATPPPA+PPPATPPPASPPPATPPPAS     PPPASPPPA+PPPASPPPATPPPATPPPATPPPAPLASP
Subjt:  PPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPAS-----PPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASP

Query:  PAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG
        PAAVPAPAPSKKK KAAP P+P+SSPP PSAE PGPAG +SPTPSQNDN G
Subjt:  PAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG

XP_002272036.3 PREDICTED: classical arabinogalactan protein 9 [Vitis vinifera]1.6e-3470.2Show/hide
Query:  MDRQALLCLSLICIVFAGAGAQSPA------------------------SPPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPA
        MD ++LL L L+CIVFAG G Q+PA                        SPP ++PPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPA+PPPA
Subjt:  MDRQALLCLSLICIVFAGAGAQSPA------------------------SPPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPA

Query:  TPPPASPPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPL-SSPPAPSAEAPGP-AGSDSPTPSQNDNRG
        TPPPA+PPPA+PPPA+PPPA+PPPATPPPATPPPATPPPAPLASPPAAVPAPAPS K    A APSPL +SPPAP AEAPGP +G  SP P+ ND  G
Subjt:  TPPPASPPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPL-SSPPAPSAEAPGP-AGSDSPTPSQNDNRG

XP_022952421.1 classical arabinogalactan protein 9-like [Cucurbita moschata]1.5e-4279.46Show/hide
Query:  MDRQALLCLSLICIVFAGAGAQSPASPPT-------------ATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPASPPPAS
        MD QAL C +LI + FA AGAQ P+SPPT             ATPPPVSAPPPAT PPATPPPA+PPPATPPPA+PPPATPPPASPPPA+PPPA+PPPAS
Subjt:  MDRQALLCLSLICIVFAGAGAQSPASPPT-------------ATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPASPPPAS

Query:  PPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG
        PPPA+PPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKK KAAP P+P+SSPP PSAE PGPAG +SPTPSQNDN G
Subjt:  PPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG

XP_023553858.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]3.8e-4178.45Show/hide
Query:  MDRQALLCLSLICIVFAGAGAQSPASPPTAT---------PPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPASPPPASPPPA
        MD QAL C +LI I FA AGAQ P+SPPTAT         PPP + PP ++PPPATPPPA+PPPATPPPA+PPPATPPPASPPPATPPPASPPPA+PPPA
Subjt:  MDRQALLCLSLICIVFAGAGAQSPASPPTAT---------PPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPASPPPASPPPA

Query:  SPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG
        SPPPA+PPPA+PPPATPPPATPPP PLASPPAAVPAPAPSKKK KAAP P+P+SSPP PSAE PGPAG +SPTPSQNDN G
Subjt:  SPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG

TrEMBL top hitse value%identityAlignment
A0A1S3BZW9 classical arabinogalactan protein 91.7e-3479.12Show/hide
Query:  RQALLCLSLICIVFAGAGAQSPASPPTAT--PPPVSAPPPA-TPPPAT--PPPATPPP-ATPPPATPPPATPPPASPPPATPPPASPPPASPPPASPPPA
        R  LLC + I I FA AGAQSP+SPPTAT  PP  SAPPPA TPPP +  PP ATPPP ATPPPA+PPPA+PPPASPPPATPPPASPPPASPPPASPPPA
Subjt:  RQALLCLSLICIVFAGAGAQSPASPPTAT--PPPVSAPPPA-TPPPAT--PPPATPPP-ATPPPATPPPATPPPASPPPATPPPASPPPASPPPASPPPA

Query:  SPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSK-AAPAPSPLSSPPAPSAEAPGPAGSD-SPTPSQNDNRGGKSV
        SPPPA+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK K AAP P+P+SSPPAPS EAPGPAG D SPTPSQNDN G + V
Subjt:  SPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSK-AAPAPSPLSSPPAPSAEAPGPAGSD-SPTPSQNDNRGGKSV

A0A438FNA0 Uncharacterized protein1.7e-3463.04Show/hide
Query:  MDRQALLCLSLICIVFAGAGAQSPA------------------------SPPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPA
        MD ++LL L L+CIVFAG G Q+PA                        SPP ++PPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPA+PPPA
Subjt:  MDRQALLCLSLICIVFAGAGAQSPA------------------------SPPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPA

Query:  TPPPASPPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPL-SSPPAPSAEAPGP-AGSDSPTPSQND----N
        TPPPA+PPPA+PPPA+PPPA+PPPATPPPATPPPATPPPAPLASPPAAVPAPAPS K    A APSPL +SPPAP AEAPGP +G  SP P+ ND     
Subjt:  TPPPASPPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPL-SSPPAPSAEAPGP-AGSDSPTPSQND----N

Query:  RGGKSVEKGDDGGEHV--DWNGICIYDALG
        +G   +     G  H+   W+G  + D  G
Subjt:  RGGKSVEKGDDGGEHV--DWNGICIYDALG

A0A5A7SJX5 Classical arabinogalactan protein 91.7e-3479.12Show/hide
Query:  RQALLCLSLICIVFAGAGAQSPASPPTAT--PPPVSAPPPA-TPPPAT--PPPATPPP-ATPPPATPPPATPPPASPPPATPPPASPPPASPPPASPPPA
        R  LLC + I I FA AGAQSP+SPPTAT  PP  SAPPPA TPPP +  PP ATPPP ATPPPA+PPPA+PPPASPPPATPPPASPPPASPPPASPPPA
Subjt:  RQALLCLSLICIVFAGAGAQSPASPPTAT--PPPVSAPPPA-TPPPAT--PPPATPPP-ATPPPATPPPATPPPASPPPATPPPASPPPASPPPASPPPA

Query:  SPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSK-AAPAPSPLSSPPAPSAEAPGPAGSD-SPTPSQNDNRGGKSV
        SPPPA+PPPA+PPPA PPPAPLASPP AVPAPAPSKKK K AAP P+P+SSPPAPS EAPGPAG D SPTPSQNDN G + V
Subjt:  SPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSK-AAPAPSPLSSPPAPSAEAPGPAGSD-SPTPSQNDNRGGKSV

A0A6J1GK65 classical arabinogalactan protein 9-like7.5e-4379.46Show/hide
Query:  MDRQALLCLSLICIVFAGAGAQSPASPPT-------------ATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPASPPPAS
        MD QAL C +LI + FA AGAQ P+SPPT             ATPPPVSAPPPAT PPATPPPA+PPPATPPPA+PPPATPPPASPPPA+PPPA+PPPAS
Subjt:  MDRQALLCLSLICIVFAGAGAQSPASPPT-------------ATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPASPPPAS

Query:  PPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG
        PPPA+PPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKK KAAP P+P+SSPP PSAE PGPAG +SPTPSQNDN G
Subjt:  PPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRG

F6H678 Uncharacterized protein1.7e-3463.04Show/hide
Query:  MDRQALLCLSLICIVFAGAGAQSPA------------------------SPPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPA
        MD ++LL L L+CIVFAG G Q+PA                        SPP ++PPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPA+PPPA
Subjt:  MDRQALLCLSLICIVFAGAGAQSPA------------------------SPPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPA

Query:  TPPPASPPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPL-SSPPAPSAEAPGP-AGSDSPTPSQND----N
        TPPPA+PPPA+PPPA+PPPA+PPPATPPPATPPPATPPPAPLASPPAAVPAPAPS K    A APSPL +SPPAP AEAPGP +G  SP P+ ND     
Subjt:  TPPPASPPPASPPPASPPPASPPPATPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPL-SSPPAPSAEAPGP-AGSDSPTPSQND----N

Query:  RGGKSVEKGDDGGEHV--DWNGICIYDALG
        +G   +     G  H+   W+G  + D  G
Subjt:  RGGKSVEKGDDGGEHV--DWNGICIYDALG

SwissProt top hitse value%identityAlignment
Q9C5S0 Classical arabinogalactan protein 94.3e-1162.72Show/hide
Query:  LSLICIV-FAGAGAQSPASPPTATPPPVSAPPPATPPP-ATPPPATPPPATPPPATPPPAT--PPPASPPP--ATPPPASPPPASPPPASPPPASPPPAT
        +++ICIV  AG   Q+P SPPTATP P   P P TPPP ATPPP + PP  P   +PPP T  PPPA+PPP  ++PPPASPPPA+PPP + PP  PP A+
Subjt:  LSLICIV-FAGAGAQSPASPPTATPPPVSAPPPATPPP-ATPPPATPPPATPPPATPPPAT--PPPASPPP--ATPPPASPPPASPPPASPPPASPPPAT

Query:  PPPATPPP-ATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPA-GSDSPTPSQND
        PPPATPPP ATPPPAPLASPPA VPAPAP+ K    +P+PSP SSPP PS++APGP+  S SP PS  D
Subjt:  PPPATPPP-ATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPA-GSDSPTPSQND

Arabidopsis top hitse value%identityAlignment
AT2G14890.1 arabinogalactan protein 93.0e-1262.72Show/hide
Query:  LSLICIV-FAGAGAQSPASPPTATPPPVSAPPPATPPP-ATPPPATPPPATPPPATPPPAT--PPPASPPP--ATPPPASPPPASPPPASPPPASPPPAT
        +++ICIV  AG   Q+P SPPTATP P   P P TPPP ATPPP + PP  P   +PPP T  PPPA+PPP  ++PPPASPPPA+PPP + PP  PP A+
Subjt:  LSLICIV-FAGAGAQSPASPPTATPPPVSAPPPATPPP-ATPPPATPPPATPPPATPPPAT--PPPASPPP--ATPPPASPPPASPPPASPPPASPPPAT

Query:  PPPATPPP-ATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPA-GSDSPTPSQND
        PPPATPPP ATPPPAPLASPPA VPAPAP+ K    +P+PSP SSPP PS++APGP+  S SP PS  D
Subjt:  PPPATPPP-ATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPA-GSDSPTPSQND

AT2G14890.2 arabinogalactan protein 93.0e-1262.72Show/hide
Query:  LSLICIV-FAGAGAQSPASPPTATPPPVSAPPPATPPP-ATPPPATPPPATPPPATPPPAT--PPPASPPP--ATPPPASPPPASPPPASPPPASPPPAT
        +++ICIV  AG   Q+P SPPTATP P   P P TPPP ATPPP + PP  P   +PPP T  PPPA+PPP  ++PPPASPPPA+PPP + PP  PP A+
Subjt:  LSLICIV-FAGAGAQSPASPPTATPPPVSAPPPATPPP-ATPPPATPPPATPPPATPPPAT--PPPASPPP--ATPPPASPPPASPPPASPPPASPPPAT

Query:  PPPATPPP-ATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPA-GSDSPTPSQND
        PPPATPPP ATPPPAPLASPPA VPAPAP+ K    +P+PSP SSPP PS++APGP+  S SP PS  D
Subjt:  PPPATPPP-ATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPA-GSDSPTPSQND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGTCAAGCTTTGTTGTGTCTCAGTTTGATCTGCATTGTCTTCGCCGGCGCCGGAGCTCAGTCCCCCGCCAGTCCTCCCACCGCCACCCCTCCGCCTGTTTCAGC
TCCTCCTCCGGCCACTCCTCCTCCAGCCACTCCTCCACCGGCCACTCCTCCTCCTGCCACTCCCCCTCCGGCCACCCCTCCTCCGGCGACTCCTCCTCCTGCTTCCCCAC
CACCGGCGACTCCTCCTCCTGCTTCCCCACCACCGGCGAGTCCTCCTCCAGCTTCCCCACCACCGGCGAGTCCTCCACCTGCAACCCCACCACCGGCTACTCCTCCACCA
GCAACCCCACCACCTGCACCATTGGCATCCCCACCGGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTCGAAGGCAGCTCCGGCTCCTTCCCCACTGTCGAGCCC
GCCGGCGCCGTCAGCTGAGGCTCCAGGACCCGCCGGCTCTGATTCTCCTACCCCATCTCAAAACGACAATCGGGGTGGAAAAAGTGTGGAGAAAGGAGATGATGGTGGGG
AGCATGTTGATTGGAATGGGATATGTATTTATGATGCTTTAGGAAGGATGGATGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCGTCAAGCTTTGTTGTGTCTCAGTTTGATCTGCATTGTCTTCGCCGGCGCCGGAGCTCAGTCCCCCGCCAGTCCTCCCACCGCCACCCCTCCGCCTGTTTCAGC
TCCTCCTCCGGCCACTCCTCCTCCAGCCACTCCTCCACCGGCCACTCCTCCTCCTGCCACTCCCCCTCCGGCCACCCCTCCTCCGGCGACTCCTCCTCCTGCTTCCCCAC
CACCGGCGACTCCTCCTCCTGCTTCCCCACCACCGGCGAGTCCTCCTCCAGCTTCCCCACCACCGGCGAGTCCTCCACCTGCAACCCCACCACCGGCTACTCCTCCACCA
GCAACCCCACCACCTGCACCATTGGCATCCCCACCGGCGGCGGTTCCGGCTCCTGCACCCAGTAAGAAGAAGTCGAAGGCAGCTCCGGCTCCTTCCCCACTGTCGAGCCC
GCCGGCGCCGTCAGCTGAGGCTCCAGGACCCGCCGGCTCTGATTCTCCTACCCCATCTCAAAACGACAATCGGGGTGGAAAAAGTGTGGAGAAAGGAGATGATGGTGGGG
AGCATGTTGATTGGAATGGGATATGTATTTATGATGCTTTAGGAAGGATGGATGCATAG
Protein sequenceShow/hide protein sequence
MDRQALLCLSLICIVFAGAGAQSPASPPTATPPPVSAPPPATPPPATPPPATPPPATPPPATPPPATPPPASPPPATPPPASPPPASPPPASPPPASPPPATPPPATPPP
ATPPPAPLASPPAAVPAPAPSKKKSKAAPAPSPLSSPPAPSAEAPGPAGSDSPTPSQNDNRGGKSVEKGDDGGEHVDWNGICIYDALGRMDA