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Spg003965 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg003965
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionZinc finger, LIM-type
Genome locationscaffold4:2072247..2073134
RNA-Seq ExpressionSpg003965
SyntenySpg003965
Gene Ontology termsGO:0051017 - actin filament bundle assembly (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR001781 - Zinc finger, LIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031371.1 LIM domain protein GLIM1a [Cucumis melo var. makuwa]1.8e-5586.99Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPK+MKPEKP+ENE  KSVSN+FGGTRDKCSGCTKTVYPIEKVTVNGTAYHK CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QKN----SVAMNLTNPVEIAAES
        QKN    + A+ LT P+EIAAES
Subjt:  QKN----SVAMNLTNPVEIAAES

KAG6571916.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia]2.8e-5385.37Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPK+ KPEKPTENE  KSVS++FGGTRDKC+GC KTVYPIEKVTVNGTAYHK CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QK-NSV---AMNLTNPVEIAAES
        QK NSV    +N  NP+EIAAES
Subjt:  QK-NSV---AMNLTNPVEIAAES

XP_022148729.1 LIM domain-containing protein WLIM1-like [Momordica charantia]2.1e-5691.6Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPKV KPEKPTE E  KSVSN+FGGTRDKCSGCTKTVYPIEKVTVNGTAYHK CFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLF EKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QKNSVAMNLTNPVEIAAES
        QKNSV+MNLT+PVEIAAES
Subjt:  QKNSVAMNLTNPVEIAAES

XP_023553857.1 LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]2.8e-5385.37Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPK+ KPEKPTENE  KSVS++FGGTRDKC+GC KTVYPIEKVTVNGTAYHK CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QK-NSV---AMNLTNPVEIAAES
        QK NSV    +N  NP+EIAAES
Subjt:  QK-NSV---AMNLTNPVEIAAES

XP_038888760.1 LIM domain-containing protein WLIM1-like [Benincasa hispida]3.9e-5588.52Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPKV+K +KPTENE  KSVSN+F GTRDKCSGCTKTVYPIEKVTVNGTAYHK CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QKN---SVAMNLTNPVEIAAES
        QKN   SVAM LT+P+EIAAES
Subjt:  QKN---SVAMNLTNPVEIAAES

TrEMBL top hitse value%identityAlignment
A0A1S4E128 LIM domain-containing protein WLIM1-like5.1e-5387.29Show/hide
Query:  MKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKN--
        MKPEKP+ENE  KSVSN+FGGTRDKCSGCTKTVYPIEKVTVNGTAYHK CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKN  
Subjt:  MKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKN--

Query:  --SVAMNLTNPVEIAAES
          + A+ LT P+EIAAES
Subjt:  --SVAMNLTNPVEIAAES

A0A5A7SP97 LIM domain protein GLIM1a8.5e-5686.99Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPK+MKPEKP+ENE  KSVSN+FGGTRDKCSGCTKTVYPIEKVTVNGTAYHK CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QKN----SVAMNLTNPVEIAAES
        QKN    + A+ LT P+EIAAES
Subjt:  QKN----SVAMNLTNPVEIAAES

A0A6J1D4V0 LIM domain-containing protein WLIM1-like1.0e-5691.6Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPKV KPEKPTE E  KSVSN+FGGTRDKCSGCTKTVYPIEKVTVNGTAYHK CFKC+HGGCTISPSNYIAHEGKLYCKHHHIQLF EKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QKNSVAMNLTNPVEIAAES
        QKNSV+MNLT+PVEIAAES
Subjt:  QKNSVAMNLTNPVEIAAES

A0A6J1GLG2 LIM domain-containing protein WLIM1-like1.4e-5385.37Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPK+ KPEKPTENE  KSVS++FGGTRDKC+GC KTVYPIEKVTVNGTAYHK CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QK-NSV---AMNLTNPVEIAAES
        QK NSV    +N  NP+EIAAES
Subjt:  QK-NSV---AMNLTNPVEIAAES

A0A6J1I4V6 LIM domain-containing protein WLIM1-like2.3e-5385.37Show/hide
Query:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
        GTPK+ KPEKPTENE  KSVS++FGGTRDKC+GC KTVYPIEKVTVNGTAYHK CFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER
Subjt:  GTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETER

Query:  QK-NSVAMN---LTNPVEIAAES
        QK NSV +N     NP+EIAAES
Subjt:  QK-NSVAMN---LTNPVEIAAES

SwissProt top hitse value%identityAlignment
O04193 LIM domain-containing protein WLIM2a3.1e-3163.37Show/hide
Query:  NFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQ
        NF S   P   KP  P  N  P  ++ +F GT+DKC+ CTKTVYPIEKVTV    YHK CFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ 
Subjt:  NFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQ

Query:  L
        L
Subjt:  L

P29675 Pollen-specific protein SF38.5e-3763.79Show/hide
Query:  GTPKVMKPEK--PTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLET
        GTPK  KPE+    E +    +S+ F GTRDKC+ C K VYPIE+V V+GTAYH+ CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLFK+KGNYSQLE 
Subjt:  GTPKVMKPEK--PTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLET

Query:  ERQKNSVAMNLTNPVE
        E    + A + T   E
Subjt:  ERQKNSVAMNLTNPVE

Q1ECF5 LIM domain-containing protein PLIM2b4.4e-2546.3Show/hide
Query:  KPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNSVA
        K EKP     P  +S++F GT+DKC+ C KTVYP+EK+ + G  +HK CF+C+HGGCT++ S+Y + +  LYC+HH  QLF EKGNY+ +         A
Subjt:  KPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKNSVA

Query:  MNLTNPVE
           T P E
Subjt:  MNLTNPVE

Q94JX5 LIM domain-containing protein WLIM11.4e-4278.79Show/hide
Query:  GTPKVMKPEKPTENEKP--KSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE
        GTPK+ KP++P E E+P    VSN+FGGTR+KC GC KTVYPIEKV+VNGT YHK CFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Subjt:  GTPKVMKPEKPTENEKP--KSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE

Q9M047 LIM domain-containing protein WLIM2b3.2e-2857.84Show/hide
Query:  FNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYS
        FN       K      P     P  V+  F GT++KC+ C+KTVYPIEKVTV    YHK CFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+
Subjt:  FNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYS

Query:  QL
         L
Subjt:  QL

Arabidopsis top hitse value%identityAlignment
AT1G10200.1 GATA type zinc finger transcription factor family protein9.6e-4478.79Show/hide
Query:  GTPKVMKPEKPTENEKP--KSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE
        GTPK+ KP++P E E+P    VSN+FGGTR+KC GC KTVYPIEKV+VNGT YHK CFKC+HGGCTISPSNYIAHEGKLYCKHHHIQL KEKGN SQLE
Subjt:  GTPKVMKPEKPTENEKP--KSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLE

AT2G39900.1 GATA type zinc finger transcription factor family protein2.2e-3263.37Show/hide
Query:  NFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQ
        NF S   P   KP  P  N  P  ++ +F GT+DKC+ CTKTVYPIEKVTV    YHK CFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+ 
Subjt:  NFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQ

Query:  L
        L
Subjt:  L

AT3G55770.1 GATA type zinc finger transcription factor family protein2.3e-2957.84Show/hide
Query:  FNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYS
        FN       K      P     P  V+  F GT++KC+ C+KTVYPIEKVTV    YHK CFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+
Subjt:  FNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYS

Query:  QL
         L
Subjt:  QL

AT3G55770.2 GATA type zinc finger transcription factor family protein2.3e-2957.84Show/hide
Query:  FNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYS
        FN       K      P     P  V+  F GT++KC+ C+KTVYPIEKVTV    YHK CFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+
Subjt:  FNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYS

Query:  QL
         L
Subjt:  QL

AT3G55770.3 GATA type zinc finger transcription factor family protein2.3e-2957.84Show/hide
Query:  FNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYS
        FN       K      P     P  V+  F GT++KC+ C+KTVYPIEKVTV    YHK CFKCSHGGC ISPSNY A EG LYCKHH  QLFKEKG+Y+
Subjt:  FNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYS

Query:  QL
         L
Subjt:  QL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGTTCTAAAATTTAATTTCCTTTCTTCAGGAACTCCAAAAGTCATGAAGCCAGAAAAGCCCACCGAAAACGAGAAACCAAAATCAGTCTCCAACCTCTTTGGTGG
CACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCTATTGAAAAGGTAACGGTGAACGGGACTGCATACCATAAATGCTGCTTCAAATGTAGCCATGGAGGAT
GCACAATCAGCCCATCAAACTACATAGCACATGAAGGGAAGCTATACTGCAAGCACCACCACATCCAACTATTCAAGGAGAAGGGAAATTACAGCCAGCTTGAAACTGAG
CGCCAAAAGAATTCAGTGGCAATGAACCTAACTAATCCAGTGGAAATTGCAGCTGAATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGTTCTAAAATTTAATTTCCTTTCTTCAGGAACTCCAAAAGTCATGAAGCCAGAAAAGCCCACCGAAAACGAGAAACCAAAATCAGTCTCCAACCTCTTTGGTGG
CACCAGAGACAAATGTTCAGGCTGTACCAAGACTGTTTATCCTATTGAAAAGGTAACGGTGAACGGGACTGCATACCATAAATGCTGCTTCAAATGTAGCCATGGAGGAT
GCACAATCAGCCCATCAAACTACATAGCACATGAAGGGAAGCTATACTGCAAGCACCACCACATCCAACTATTCAAGGAGAAGGGAAATTACAGCCAGCTTGAAACTGAG
CGCCAAAAGAATTCAGTGGCAATGAACCTAACTAATCCAGTGGAAATTGCAGCTGAATCATAG
Protein sequenceShow/hide protein sequence
MLVLKFNFLSSGTPKVMKPEKPTENEKPKSVSNLFGGTRDKCSGCTKTVYPIEKVTVNGTAYHKCCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETE
RQKNSVAMNLTNPVEIAAES