; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004027 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004027
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLIM zinc-binding domain-containing protein
Genome locationscaffold4:2073216..2081306
RNA-Seq ExpressionSpg004027
SyntenySpg004027
Gene Ontology termsGO:0051017 - actin filament bundle assembly (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR001781 - Zinc finger, LIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022503.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-4096.34Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGKFS
        MASF+GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG  S
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGKFS

XP_022927664.1 LIM domain-containing protein WLIM1-like [Cucurbita moschata]9.6e-4098.73Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF+GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

XP_022988956.1 LIM domain-containing protein WLIM1-like [Cucurbita maxima]9.6e-4098.73Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF+GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

XP_023529874.1 LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]9.6e-4098.73Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF+GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

XP_038888760.1 LIM domain-containing protein WLIM1-like [Benincasa hispida]1.3e-3998.73Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

TrEMBL top hitse value%identityAlignment
A0A0A0K2E5 Uncharacterized protein1.4e-3997.47Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF+GTTQKCMAC+KTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

A0A6J1D4V0 LIM domain-containing protein WLIM1-like1.4e-3997.47Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF+GTTQKCMAC+KTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

A0A6J1EIM6 LIM domain-containing protein WLIM1-like4.7e-4098.73Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF+GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

A0A6J1GLG2 LIM domain-containing protein WLIM1-like3.0e-3996.2Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF GTTQKCMACDKTVYLVDKLTADNR+FHK CFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

A0A6J1JIN6 LIM domain-containing protein WLIM1-like4.7e-4098.73Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        MASF+GTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

SwissProt top hitse value%identityAlignment
O04193 LIM domain-containing protein WLIM2a1.8e-2561.73Show/hide
Query:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGKFSP
        SFTGT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY S EGV+YCRPH++QLFK +GS  K+F+    P
Subjt:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGKFSP

O80839 LIM domain-containing protein PLIM2a1.8e-2561.84Show/hide
Query:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE
        SFTGT  KC ACDKTVY++D LT +   +HK+CFRC HCKGTL +SNY S +GVLYC+PH++QLFK +G+  K+F+
Subjt:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE

P29675 Pollen-specific protein SF31.5e-3274.12Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG--KFSP
        M SFTGTTQKC  C+KTVYLVDKL A+ RV+HKACFRC+HC  TLKLSN+ SF+GV+YCR H+DQLFKRTGSL+KSF+G  KF P
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG--KFSP

Q500W4 LIM domain-containing protein PLIM2c2.6e-2457.69Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE
        MA+FTGTT KC ACDKTVY++D +T +   +HK+CFRC HC GTL + NY S +GVLYC+ H++QLFK +G+  K+F+
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE

Q94JX5 LIM domain-containing protein WLIM14.6e-3789.61Show/hide
Query:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        +F GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HCKGTLKLSNY SFEGVLYCRPH+DQ FKRTGSL+KSFEG
Subjt:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

Arabidopsis top hitse value%identityAlignment
AT1G10200.1 GATA type zinc finger transcription factor family protein3.3e-3889.61Show/hide
Query:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG
        +F GTTQKCMACDKTVYLVDKLTADNRV+HKACFRC+HCKGTLKLSNY SFEGVLYCRPH+DQ FKRTGSL+KSFEG
Subjt:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEG

AT2G39900.1 GATA type zinc finger transcription factor family protein1.3e-2661.73Show/hide
Query:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGKFSP
        SFTGT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY S EGV+YCRPH++QLFK +GS  K+F+    P
Subjt:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGKFSP

AT2G45800.1 GATA type zinc finger transcription factor family protein1.3e-2661.84Show/hide
Query:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE
        SFTGT  KC ACDKTVY++D LT +   +HK+CFRC HCKGTL +SNY S +GVLYC+PH++QLFK +G+  K+F+
Subjt:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE

AT3G55770.1 GATA type zinc finger transcription factor family protein1.9e-2561.84Show/hide
Query:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE
        SFTGT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y S EGVLYC+PH++QLFK +GS +K+F+
Subjt:  SFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE

AT3G61230.1 GATA type zinc finger transcription factor family protein1.9e-2557.69Show/hide
Query:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE
        MA+FTGTT KC ACDKTVY++D +T +   +HK+CFRC HC GTL + NY S +GVLYC+ H++QLFK +G+  K+F+
Subjt:  MASFTGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGGAAGACGTGGCCTGCAAGATAGAGAACCTGCACACCGGTGTGGTGCTAGCCACACCGCCTCCGATGCTTAAGTCAGCAAACAGAACGATGGGAAGCAAGAAAGTAAG
AGCAAGAGGAGAGGTTTTTAGGAATTCGGAGGCGTTTTGGGACAAACCAGGTAGAATCGAGGCGGCTAGAGGCAGCATGGACCGAGCGGAGTTGCTTCTATCTTTCGGAG
GGACTAAGGTTAAAAAGGTAATTTTGGACCACCCTGTTGCACAAGCTGACGAGGACAATCGGGCAGAGATAGGACCAGGAAATCGACCCGGAGGAAGACCAGACCAAAGG
GTCGGGCCAACGTGGCCCGACCATTCGACCCGCGCAGTCGCCTCCGTTTGGTCCCTGCTGCCTCTGGCCTCCCCGGTTCCGCCTGATTTGTCCCGAAACGCCTCCGAATT
CCTAAAAACCCTAGGAGCGCAAGCAGGAAAATCACCCCTATCTCAGGAAATTACAGAAAAAGCACTTCCATTGGGTAATGAGAAGAGAGAATTGGCTTATTTCAGAACAC
TACAGGAAGCCATGGCCAGCTTTACTGGAACCACACAAAAGTGCATGGCCTGTGACAAGACAGTTTATCTTGTTGATAAGCTTACTGCTGATAATAGGGTCTTCCATAAG
GCTTGCTTCCGATGCTACCATTGTAAAGGCACTCTCAAGCTTAGCAACTATTGCTCCTTTGAGGGAGTGCTGTACTGCAGGCCTCACTATGACCAACTCTTCAAGAGAAC
TGGCAGCCTTGACAAGAGCTTTGAAGGCAAATTTTCTCCTTAA
mRNA sequenceShow/hide mRNA sequence
GGGGAAGACGTGGCCTGCAAGATAGAGAACCTGCACACCGGTGTGGTGCTAGCCACACCGCCTCCGATGCTTAAGTCAGCAAACAGAACGATGGGAAGCAAGAAAGTAAG
AGCAAGAGGAGAGGTTTTTAGGAATTCGGAGGCGTTTTGGGACAAACCAGGTAGAATCGAGGCGGCTAGAGGCAGCATGGACCGAGCGGAGTTGCTTCTATCTTTCGGAG
GGACTAAGGTTAAAAAGGTAATTTTGGACCACCCTGTTGCACAAGCTGACGAGGACAATCGGGCAGAGATAGGACCAGGAAATCGACCCGGAGGAAGACCAGACCAAAGG
GTCGGGCCAACGTGGCCCGACCATTCGACCCGCGCAGTCGCCTCCGTTTGGTCCCTGCTGCCTCTGGCCTCCCCGGTTCCGCCTGATTTGTCCCGAAACGCCTCCGAATT
CCTAAAAACCCTAGGAGCGCAAGCAGGAAAATCACCCCTATCTCAGGAAATTACAGAAAAAGCACTTCCATTGGGTAATGAGAAGAGAGAATTGGCTTATTTCAGAACAC
TACAGGAAGCCATGGCCAGCTTTACTGGAACCACACAAAAGTGCATGGCCTGTGACAAGACAGTTTATCTTGTTGATAAGCTTACTGCTGATAATAGGGTCTTCCATAAG
GCTTGCTTCCGATGCTACCATTGTAAAGGCACTCTCAAGCTTAGCAACTATTGCTCCTTTGAGGGAGTGCTGTACTGCAGGCCTCACTATGACCAACTCTTCAAGAGAAC
TGGCAGCCTTGACAAGAGCTTTGAAGGCAAATTTTCTCCTTAA
Protein sequenceShow/hide protein sequence
GEDVACKIENLHTGVVLATPPPMLKSANRTMGSKKVRARGEVFRNSEAFWDKPGRIEAARGSMDRAELLLSFGGTKVKKVILDHPVAQADEDNRAEIGPGNRPGGRPDQR
VGPTWPDHSTRAVASVWSLLPLASPVPPDLSRNASEFLKTLGAQAGKSPLSQEITEKALPLGNEKRELAYFRTLQEAMASFTGTTQKCMACDKTVYLVDKLTADNRVFHK
ACFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGKFSP