CuGenDBv2

Gene ID	Spg004028
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA repair protein XRCC4-like
Genome location	scaffold4:2960837..2965086
RNA-Seq Expression	Spg004028
Synteny	Spg004028
Gene Ontology terms	GO:0006303 - double-strand break repair via nonhomologous end joining (biological process) GO:0006310 - DNA recombination (biological process) GO:0010165 - response to X-ray (biological process) GO:0051103 - DNA ligation involved in DNA repair (biological process) GO:0051351 - positive regulation of ligase activity (biological process) GO:0005958 - DNA-dependent protein kinase-DNA ligase 4 complex (cellular component) GO:0032807 - DNA ligase IV complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0016874 - ligase activity (molecular function)
InterPro domains	IPR009089 - XRCC4, N-terminal domain superfamily IPR010585 - DNA repair protein XRCC4 IPR014751 - DNA repair protein XRCC4-like, C-terminal IPR038051 - XRCC4-like, N-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571850.1 DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-109

85.9

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MDA+RHTCLKLEVPT+AQ +   SIFVKGTW+ HRF LSITDGLNAWTC+ATEDEVRLRA QWDQEPSDYV+LAERYLGFQQP SVYGFAD GNGDKRLS
Subjt:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKCR ASDNKTTTAGILDFLMDANIRLS+EVVRKTQSFE+LKVESEKCLAQSE+I +EKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
          KQTTTSSKLKQ+++Y SDKTE++DD+SDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

XP_004136882.1 DNA repair protein XRCC4 [Cucumis sativus]

3.4e-110

88.46

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MDA+RHTCLKLEVPT+AQ NE +SIFVKGTW H RF LSITDG +AWTC+ATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGS+Y FADAGNG KRLS
Subjt:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+PASDNKTTTAGIL+FLMDANIRLS+EVVRK QS ERLK ESEKCLAQSEKI DEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
        LS+QT T SKLKQEE YSSDKTE++DDESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

XP_008455175.1 PREDICTED: DNA repair protein XRCC4 [Cucumis melo]

7.4e-113

90.17

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Query:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MDA+RHTCLKLEVPT+AQ +E +SIFVKGTW HHRF LSITDGL+AWTC+ATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLS
Subjt:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+PASDNKTTTA IL+FLMDANIRLS+EVVRKTQS ERLK ESEKCLAQSEKI DEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
        LSKQTTT SKLKQEE YSSDKTE++DDESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

XP_022141947.1 DNA repair protein XRCC4-like [Momordica charantia]

3.3e-113

90.21

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASI-FVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRL
        MDA+RHTCLKLEVP+ AQ NES SI FVKGTWF HRF LSITDGLNAWTC+ATEDEVRLRA QWDQEPSDYVALAER+LGFQQPGSVYGFADAGNGDKRL
Subjt:  MDAVRHTCLKLEVPTDAQQNESASI-FVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRL

Query:  SWTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRD
        SWTFDKEGMKLEWRW C+PASDNK TTAGILDFLMDANIRLS+EVVRKTQSFERLKVESE CLAQSEKI  EKVEFETAIYAKFLNVLN+KKAKLR YRD
Subjt:  SWTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRD

Query:  QLSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
        QLSKQTT SSKLKQEE+YSSDKTET+DDESDAEKN
Subjt:  QLSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

XP_038888651.1 DNA repair protein XRCC4 [Benincasa hispida]

5.7e-113

89.74

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MDA RHTCLKLEVPT+AQ N+ +SIFVKGTW HH F LSITDGLNAW+C+ATEDEV LRAAQWDQEPSDYVALAERYLGFQQPGSVYGF DAGNGD+RLS
Subjt:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+PASDNKTTTAGILDFLMDANIRLS+EVVRKTQ FERLK ESE+CLAQSEKI DEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
        LSKQTTT SKLKQEE YSSDKTE++DDESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K2L2 Uncharacterized protein

1.7e-110

88.46

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MDA+RHTCLKLEVPT+AQ NE +SIFVKGTW H RF LSITDG +AWTC+ATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGS+Y FADAGNG KRLS
Subjt:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+PASDNKTTTAGIL+FLMDANIRLS+EVVRK QS ERLK ESEKCLAQSEKI DEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
        LS+QT T SKLKQEE YSSDKTE++DDESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

A0A1S3BZW1 DNA repair protein XRCC4

3.6e-113

90.17

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MDA+RHTCLKLEVPT+AQ +E +SIFVKGTW HHRF LSITDGL+AWTC+ATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLS
Subjt:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+PASDNKTTTA IL+FLMDANIRLS+EVVRKTQS ERLK ESEKCLAQSEKI DEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
        LSKQTTT SKLKQEE YSSDKTE++DDESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

A0A5A7SK69 DNA repair protein XRCC4

3.6e-113

90.17

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MDA+RHTCLKLEVPT+AQ +E +SIFVKGTW HHRF LSITDGL+AWTC+ATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLS
Subjt:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTFDKEGMKLEWRWKC+PASDNKTTTA IL+FLMDANIRLS+EVVRKTQS ERLK ESEKCLAQSEKI DEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
        LSKQTTT SKLKQEE YSSDKTE++DDESDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

A0A6J1CL88 DNA repair protein XRCC4-like

1.6e-113

90.21

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASI-FVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRL
        MDA+RHTCLKLEVP+ AQ NES SI FVKGTWF HRF LSITDGLNAWTC+ATEDEVRLRA QWDQEPSDYVALAER+LGFQQPGSVYGFADAGNGDKRL
Subjt:  MDAVRHTCLKLEVPTDAQQNESASI-FVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRL

Query:  SWTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRD
        SWTFDKEGMKLEWRW C+PASDNK TTAGILDFLMDANIRLS+EVVRKTQSFERLKVESE CLAQSEKI  EKVEFETAIYAKFLNVLN+KKAKLR YRD
Subjt:  SWTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRD

Query:  QLSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
        QLSKQTT SSKLKQEE+YSSDKTET+DDESDAEKN
Subjt:  QLSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

A0A6J1GJL0 DNA repair protein XRCC4

1.8e-109

85.9

Show/hide

Query:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS
        MDA+RHTCLKLEVPT+AQ +   SIFVKGTW+ HRF LSITDGLNAWTC+ATEDEVRLRA QWDQEPSDYV+LAERYLGFQQP SVYGFAD GNGDKRLS
Subjt:  MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLS

Query:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ
        WTF+KEGMKLEWRWKCR ASDNKTTTAGILDFLMDANIRLS+EVVRKTQSFE+LKVESEKCLAQSE+I +EKVEFETA+YAKFLNVLN KKAKLREYRDQ
Subjt:  WTFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQ

Query:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN
          KQTTTSSKLKQ+++Y SDKTE++DD+SDAEKN
Subjt:  LSKQTTTSSKLKQEEDYSSDKTETYDDESDAEKN

SwissProt top hits

e value

%identity

Alignment

Q13426 DNA repair protein XRCC4

1.8e-05

25.76

Show/hide

Query:  SASIFVKGTW---FHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVA-LAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCR
        S + F++ +W       F +++TDG +AWT   +E E+   A     E   YV  L +  L    P  VY F    N  K   + F ++ +K       R
Subjt:  SASIFVKGTW---FHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVA-LAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCR

Query:  PASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCL-------AQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSK
          S N        + + +      D +       E L+ E+E+ L        + EK    K   ET +Y +F+ VLN KK K+R   ++L        K
Subjt:  PASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCL-------AQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSK

Query:  -LKQE------EDYSSDKTETYDDESDAE
         +KQE       + ++D+   YD+ +D E
Subjt:  -LKQE------EDYSSDKTETYDDESDAE

Q682V0 DNA repair protein XRCC4

3.3e-71

59.4

Show/hide

Query:  DAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSW
        +  +HTCL+LE+      + +  IFVKGTW + RF +S+TDG ++W CNATE+EV  RAAQWDQ  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSW
Subjt:  DAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSW

Query:  TFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQL
        TF+KEG KLEWRWKC+P+ D+K  T GILDFLM+ANIRLS+EVV KT+SFE+++ E+E+CLAQ EK+ DEK EFE+A YAKFL+VLNAKKAKLR  RD+ 
Subjt:  TFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQL

Query:  SKQTTTSSKLKQEEDYSSDKTETYDD-ESDAEKN
               S    EE+ S+DK E+++   SD EK+
Subjt:  SKQTTTSSKLKQEEDYSSDKTETYDD-ESDAEKN

Arabidopsis top hits

e value

%identity

Alignment

AT1G61410.1 DNA double-strand break repair and VJ recombination XRCC4

1.9e-18

54.9

Show/hide

Query:  MDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTET--YDDESDA
        M+ANIRLS+EVV KT+SFE++K E+E+CLAQ EK+ DEK EFE A YAKFL+VLNAKKAKLR  RD   K+ +  +  ++E  Y ++  E+   DDE   
Subjt:  MDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTET--YDDESDA

Query:  EK
        E+
Subjt:  EK

AT3G23100.1 homolog of human DNA ligase iv-binding protein XRCC4

2.3e-72

59.4

Show/hide

Query:  DAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSW
        +  +HTCL+LE+      + +  IFVKGTW + RF +S+TDG ++W CNATE+EV  RAAQWDQ  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSW
Subjt:  DAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSW

Query:  TFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQL
        TF+KEG KLEWRWKC+P+ D+K  T GILDFLM+ANIRLS+EVV KT+SFE+++ E+E+CLAQ EK+ DEK EFE+A YAKFL+VLNAKKAKLR  RD+ 
Subjt:  TFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQL

Query:  SKQTTTSSKLKQEEDYSSDKTETYDD-ESDAEKN
               S    EE+ S+DK E+++   SD EK+
Subjt:  SKQTTTSSKLKQEEDYSSDKTETYDD-ESDAEKN

AT3G23100.2 homolog of human DNA ligase iv-binding protein XRCC4

2.3e-72

59.4

Show/hide

Query:  DAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSW
        +  +HTCL+LE+      + +  IFVKGTW + RF +S+TDG ++W CNATE+EV  RAAQWDQ  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSW
Subjt:  DAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSW

Query:  TFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQL
        TF+KEG KLEWRWKC+P+ D+K  T GILDFLM+ANIRLS+EVV KT+SFE+++ E+E+CLAQ EK+ DEK EFE+A YAKFL+VLNAKKAKLR  RD+ 
Subjt:  TFDKEGMKLEWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQL

Query:  SKQTTTSSKLKQEEDYSSDKTETYDD-ESDAEKN
               S    EE+ S+DK E+++   SD EK+
Subjt:  SKQTTTSSKLKQEEDYSSDKTETYDD-ESDAEKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGCAGTCAGGCACACATGCCTGAAGCTCGAAGTACCAACCGACGCGCAACAGAACGAAAGCGCCTCCATCTTCGTCAAAGGCACCTGGTTTCACCACCGATTCCA
GCTCTCGATCACCGATGGCCTCAACGCTTGGACCTGCAATGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCCTTGG
CCGAGCGCTATTTGGGGTTTCAACAGCCTGGTTCGGTCTATGGATTCGCCGATGCTGGAAATGGAGACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTA
GAATGGCGATGGAAGTGTCGACCAGCATCTGATAATAAGACTACCACAGCTGGAATATTGGATTTTCTTATGGATGCAAACATAAGGCTGAGCGATGAGGTTGTGAGAAA
AACCCAATCATTCGAGAGGCTGAAAGTGGAGTCTGAGAAGTGTCTGGCTCAGAGCGAGAAGATTCGTGATGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGTTTC
TAAATGTCTTGAACGCAAAGAAGGCCAAACTTAGAGAGTACAGAGATCAGCTTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAAGACTACTCCTCTGAT
AAAACCGAAACTTATGACGATGAAAGCGATGCAGAAAAGAACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDAVRHTCLKLEVPTDAQQNESASIFVKGTWFHHRFQLSITDGLNAWTCNATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKL
EWRWKCRPASDNKTTTAGILDFLMDANIRLSDEVVRKTQSFERLKVESEKCLAQSEKIRDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSD
KTETYDDESDAEKN

Spg004028 (gene) of Sponge gourd (cylindrica) v1 genome