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Spg004044 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004044
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold4:1315755..1318857
RNA-Seq ExpressionSpg004044
SyntenySpg004044
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455144.1 PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Cucumis melo]1.5e-2763.71Show/hide
Query:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG
        KGAKS+SRNLSDELIDIDAEVGKGA+TDSFSE++SYE+IHIDSE                        +  STLNTSHQ+  GP DL+ ED CAD SLEG
Subjt:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG

Query:  GDSTKQEISETNDALLLSRSSTNE
        G S KQEI ETND LL SRSSTNE
Subjt:  GDSTKQEISETNDALLLSRSSTNE

XP_008455146.1 PREDICTED: probable ubiquitin-like-specific protease 2A isoform X2 [Cucumis melo]1.5e-2763.71Show/hide
Query:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG
        KGAKS+SRNLSDELIDIDAEVGKGA+TDSFSE++SYE+IHIDSE                        +  STLNTSHQ+  GP DL+ ED CAD SLEG
Subjt:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG

Query:  GDSTKQEISETNDALLLSRSSTNE
        G S KQEI ETND LL SRSSTNE
Subjt:  GDSTKQEISETNDALLLSRSSTNE

XP_038888439.1 probable ubiquitin-like-specific protease 2A isoform X1 [Benincasa hispida]3.9e-2360Show/hide
Query:  AKGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLE
        AKGA+S+SRNLSD  I IDAEVGK A+TDSFSE+VS E+IH DSE                        +  STLNTSHQ+  GPTDLD ED CAD SLE
Subjt:  AKGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLE

Query:  GGDSTKQEISETNDALLLSRSSTNE
        G  STKQEI ETND  LLS SSTNE
Subjt:  GGDSTKQEISETNDALLLSRSSTNE

XP_038888441.1 probable ubiquitin-like-specific protease 2A isoform X3 [Benincasa hispida]3.0e-2359.52Show/hide
Query:  LAKGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSL
        +AKGA+S+SRNLSD  I IDAEVGK A+TDSFSE+VS E+IH DSE                        +  STLNTSHQ+  GPTDLD ED CAD SL
Subjt:  LAKGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSL

Query:  EGGDSTKQEISETNDALLLSRSSTNE
        EG  STKQEI ETND  LLS SSTNE
Subjt:  EGGDSTKQEISETNDALLLSRSSTNE

XP_038888442.1 uncharacterized protein LOC120078284 isoform X4 [Benincasa hispida]3.9e-2360Show/hide
Query:  AKGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLE
        AKGA+S+SRNLSD  I IDAEVGK A+TDSFSE+VS E+IH DSE                        +  STLNTSHQ+  GPTDLD ED CAD SLE
Subjt:  AKGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLE

Query:  GGDSTKQEISETNDALLLSRSSTNE
        G  STKQEI ETND  LLS SSTNE
Subjt:  GGDSTKQEISETNDALLLSRSSTNE

TrEMBL top hitse value%identityAlignment
A0A0A0K633 ULP_PROTEASE domain-containing protein6.1e-2257.26Show/hide
Query:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG
        KGAKS+SRNLSDELIDIDAEVGK A+ DSFSE+VS E+IHIDSE                                 HQ+  GPTDL+ ED CAD  LEG
Subjt:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG

Query:  GDSTKQEISETNDALLLSRSSTNE
        G S KQEI ETND +LLSRSSTNE
Subjt:  GDSTKQEISETNDALLLSRSSTNE

A0A1S3C0Z2 probable ubiquitin-like-specific protease 2A isoform X17.4e-2863.71Show/hide
Query:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG
        KGAKS+SRNLSDELIDIDAEVGKGA+TDSFSE++SYE+IHIDSE                        +  STLNTSHQ+  GP DL+ ED CAD SLEG
Subjt:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG

Query:  GDSTKQEISETNDALLLSRSSTNE
        G S KQEI ETND LL SRSSTNE
Subjt:  GDSTKQEISETNDALLLSRSSTNE

A0A1S3C1G7 probable ubiquitin-like-specific protease 2A isoform X27.4e-2863.71Show/hide
Query:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG
        KGAKS+SRNLSDELIDIDAEVGKGA+TDSFSE++SYE+IHIDSE                        +  STLNTSHQ+  GP DL+ ED CAD SLEG
Subjt:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG

Query:  GDSTKQEISETNDALLLSRSSTNE
        G S KQEI ETND LL SRSSTNE
Subjt:  GDSTKQEISETNDALLLSRSSTNE

A0A5A7SPN7 Putative ubiquitin-like-specific protease 2A isoform X27.4e-2863.71Show/hide
Query:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG
        KGAKS+SRNLSDELIDIDAEVGKGA+TDSFSE++SYE+IHIDSE                        +  STLNTSHQ+  GP DL+ ED CAD SLEG
Subjt:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG

Query:  GDSTKQEISETNDALLLSRSSTNE
        G S KQEI ETND LL SRSSTNE
Subjt:  GDSTKQEISETNDALLLSRSSTNE

A0A5D3C6D6 Putative ubiquitin-like-specific protease 2A isoform X21.4e-1551.2Show/hide
Query:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG
        KGAKS+SRNLSDELIDIDAEVGKGA+TDSFSE++SYE+IHIDSE                                                  D SLEG
Subjt:  KGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACADWSLEG

Query:  GDSTKQEISETNDALLLSRSSTNEV
        G S KQEI ETND LL SRSSTNEV
Subjt:  GDSTKQEISETNDALLLSRSSTNEV

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.0e-0734.25Show/hide
Query:  VCKNIEALLINFMWKGVDLAKGSHLVNWGKVTTRRSLGGLGIDNLRAKNLALLAKWLWRFEKEKSALWRVVVK
        +   ++ L   F+W      K  HLV W KV + +  GGLG+   ++ N AL++K  WR  +EK++LW +V++
Subjt:  VCKNIEALLINFMWKGVDLAKGSHLVNWGKVTTRRSLGGLGIDNLRAKNLALLAKWLWRFEKEKSALWRVVVK

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.9e-0836.49Show/hide
Query:  VCKNIEALLINFMWKGVDLAKGSHLVNWGKVTTRRSLGGLGIDNLRAKNLALLAKWLWRFEKEKSALWRVVVKT
        VCK I ++L +F W+    AKG H   W  ++  ++ GG+G  ++ A NLALL K +WR      +L   V K+
Subjt:  VCKNIEALLINFMWKGVDLAKGSHLVNWGKVTTRRSLGGLGIDNLRAKNLALLAKWLWRFEKEKSALWRVVVKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATGAAGGGCTGATGACTCAGAAATATTCTACACTTGCAAAAGGTGCCAAAAGTTTAAGCAGGAATCTTAGCGATGAGCTCATTGATATTGACGCTGAAGTTGG
AAAAGGTGCCGACACTGATAGTTTCTCTGAAAATGTCAGCTACGAAGTCATTCACATTGATTCTGAAGAGAAAGATGGAGCATTTGTGAAAAAGAAGGATACTGTCTTTT
GTAACTACTCATCTTCCATGGCTCTAGCCATTGGCAACTCTACTCTAAATACAAGTCATCAAGTTTGCATTGGACCAACTGATCTCGATCCCGAAGATGCATGTGCAGAT
TGGTCACTTGAAGGTGGTGATTCTACAAAGCAGGAAATTTCTGAAACCAATGATGCTCTTTTGCTTTCTCGTTCTTCAACTAATGAGGTGTGTAAGAACATCGAGGCCTT
ACTTATAAATTTTATGTGGAAGGGCGTTGATTTGGCTAAAGGCAGTCACTTAGTTAATTGGGGCAAAGTTACCACCCGTAGATCTTTGGGAGGCTTGGGGATTGACAATT
TGAGGGCCAAAAATCTTGCCCTTTTAGCTAAATGGCTGTGGAGGTTTGAGAAAGAGAAGTCTGCTTTGTGGCGTGTGGTGGTGAAGACAAATTTGGTGACAACTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAATGAAGGGCTGATGACTCAGAAATATTCTACACTTGCAAAAGGTGCCAAAAGTTTAAGCAGGAATCTTAGCGATGAGCTCATTGATATTGACGCTGAAGTTGG
AAAAGGTGCCGACACTGATAGTTTCTCTGAAAATGTCAGCTACGAAGTCATTCACATTGATTCTGAAGAGAAAGATGGAGCATTTGTGAAAAAGAAGGATACTGTCTTTT
GTAACTACTCATCTTCCATGGCTCTAGCCATTGGCAACTCTACTCTAAATACAAGTCATCAAGTTTGCATTGGACCAACTGATCTCGATCCCGAAGATGCATGTGCAGAT
TGGTCACTTGAAGGTGGTGATTCTACAAAGCAGGAAATTTCTGAAACCAATGATGCTCTTTTGCTTTCTCGTTCTTCAACTAATGAGGTGTGTAAGAACATCGAGGCCTT
ACTTATAAATTTTATGTGGAAGGGCGTTGATTTGGCTAAAGGCAGTCACTTAGTTAATTGGGGCAAAGTTACCACCCGTAGATCTTTGGGAGGCTTGGGGATTGACAATT
TGAGGGCCAAAAATCTTGCCCTTTTAGCTAAATGGCTGTGGAGGTTTGAGAAAGAGAAGTCTGCTTTGTGGCGTGTGGTGGTGAAGACAAATTTGGTGACAACTTCATGA
Protein sequenceShow/hide protein sequence
MENEGLMTQKYSTLAKGAKSLSRNLSDELIDIDAEVGKGADTDSFSENVSYEVIHIDSEEKDGAFVKKKDTVFCNYSSSMALAIGNSTLNTSHQVCIGPTDLDPEDACAD
WSLEGGDSTKQEISETNDALLLSRSSTNEVCKNIEALLINFMWKGVDLAKGSHLVNWGKVTTRRSLGGLGIDNLRAKNLALLAKWLWRFEKEKSALWRVVVKTNLVTTS