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Spg004051 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004051
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGRF-type domain-containing protein
Genome locationscaffold4:2452915..2456766
RNA-Seq ExpressionSpg004051
SyntenySpg004051
Gene Ontology termsGO:0003779 - actin binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type
IPR027310 - Profilin conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4320931.1 unnamed protein product [Prunus armeniaca]3.4e-4264.14Show/hide
Query:  EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDELTLKLFT
        E+S L+C CG+PAKLR S T KNPFRLFYNCPK IS QC FF W+DE  P+ D   DE NLIR+ECIRLQE L+EI  E D ER EW REK ELT +L T
Subjt:  EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDELTLKLFT

Query:  LQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LQ+ELD ++ RI+MANE   MPP D LSI D  D+DDDALV++T+
Subjt:  LQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

KAE8645848.1 hypothetical protein Csa_017077 [Cucumis sativus]1.2e-5574.32Show/hide
Query:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE
        MSS EIYEESYLECYCGV AKLR S T+K PFRLFYNCPKEISQQCGFFHWADE EPS+D H +EL+LIRN CIRL ERLDEI +EH+ E+ EW REK E
Subjt:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE

Query:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALV
        LTLKL TLQT+LDDI NR+R+ NE  SMPPF+SLSIRDD+D++   +V
Subjt:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALV

XP_004136954.1 uncharacterized protein LOC101219463 [Cucumis sativus]7.5e-5875.66Show/hide
Query:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE
        MSS EIYEESYLECYCGV AKLR S T+K PFRLFYNCPKEISQQCGFFHWADE EPS+D H +EL+LIRN CIRL ERLDEI +EH+ E+ EW REK E
Subjt:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE

Query:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LTLKL TLQT+LDDI NR+R+ NE  SMPPF+SLSIRD  D+DD+ LV+YTL
Subjt:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

XP_008455003.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]4.4e-5876.32Show/hide
Query:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE
        MSS EIYEESYLECYCG  AKLR S T+KNPFRLFYNCPKE+SQQCGFFHWADE EPSDD H +EL+LIRN CIRL ERLDEI +EH+ E+ EW REK E
Subjt:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE

Query:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LTLKL TLQT+LDDI NRIR+ NE  SMPPF+SLSIRDD D+++D LVVY L
Subjt:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

XP_022148840.1 uncharacterized protein LOC111017399 [Momordica charantia]8.0e-6076.32Show/hide
Query:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE
        MS+ EI+EES LECYCG+PAKLRTS T KNPFRLFYNCPKEISQQCGFFHWADE EPSDD H +ELNLIRN C+ LQ+RLDEI++EHD E+AEW R+K+E
Subjt:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE

Query:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LTL+L TLQ++LDDI++RIRMANE  SMPP D+LSIRD  DE DDALV+YTL
Subjt:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

TrEMBL top hitse value%identityAlignment
A0A0A0K2H6 GRF-type domain-containing protein3.6e-5875.66Show/hide
Query:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE
        MSS EIYEESYLECYCGV AKLR S T+K PFRLFYNCPKEISQQCGFFHWADE EPS+D H +EL+LIRN CIRL ERLDEI +EH+ E+ EW REK E
Subjt:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE

Query:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LTLKL TLQT+LDDI NR+R+ NE  SMPPF+SLSIRD  D+DD+ LV+YTL
Subjt:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

A0A1S4E0B8 uncharacterized protein LOC1034952842.1e-5876.32Show/hide
Query:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE
        MSS EIYEESYLECYCG  AKLR S T+KNPFRLFYNCPKE+SQQCGFFHWADE EPSDD H +EL+LIRN CIRL ERLDEI +EH+ E+ EW REK E
Subjt:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE

Query:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LTLKL TLQT+LDDI NRIR+ NE  SMPPF+SLSIRDD D+++D LVVY L
Subjt:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

A0A5A7SJM5 GRF-type domain-containing protein2.1e-5876.32Show/hide
Query:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE
        MSS EIYEESYLECYCG  AKLR S T+KNPFRLFYNCPKE+SQQCGFFHWADE EPSDD H +EL+LIRN CIRL ERLDEI +EH+ E+ EW REK E
Subjt:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE

Query:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LTLKL TLQT+LDDI NRIR+ NE  SMPPF+SLSIRDD D+++D LVVY L
Subjt:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

A0A6J1D427 uncharacterized protein LOC1110173993.9e-6076.32Show/hide
Query:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE
        MS+ EI+EES LECYCG+PAKLRTS T KNPFRLFYNCPKEISQQCGFFHWADE EPSDD H +ELNLIRN C+ LQ+RLDEI++EHD E+AEW R+K+E
Subjt:  MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDE

Query:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LTL+L TLQ++LDDI++RIRMANE  SMPP D+LSIRD  DE DDALV+YTL
Subjt:  LTLKLFTLQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

A0A6J5Y667 GRF-type domain-containing protein1.6e-4264.14Show/hide
Query:  EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDELTLKLFT
        E+S L+C CG+PAKLR S T KNPFRLFYNCPK IS QC FF W+DE  P+ D   DE NLIR+ECIRLQE L+EI  E D ER EW REK ELT +L T
Subjt:  EESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDELTLKLFT

Query:  LQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL
        LQ+ELD ++ RI+MANE   MPP D LSI D  D+DDDALV++T+
Subjt:  LQTELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein3.0e-0443.18Show/hide
Query:  LECYCGV-PAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADE
        + C C   P    TS T+KNP R FY CP      CG+F W D+
Subjt:  LECYCGV-PAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADE

AT3G42860.1 zinc knuckle (CCHC-type) family protein2.1e-0548.94Show/hide
Query:  CYCGVP-AKLRTSLTQKNPFRLFYNCP-KEISQQCGFFHWADELEPS
        C CGV    + TS T KNP R FY CP +E +  CGFF W D ++ S
Subjt:  CYCGVP-AKLRTSLTQKNPFRLFYNCP-KEISQQCGFFHWADELEPS

AT5G63920.1 topoisomerase 3alpha6.7e-0440.38Show/hide
Query:  EESYLEC-YCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPS
        +ES + C  CG    LRT+ T+ N  R F++CP   +Q C FF W D +  S
Subjt:  EESYLEC-YCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTTGGGAAATTTATGAGGAATCTTATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGAGAACGTCCCTGACACAAAAAAATCCATTCAGGTTATTCTACAA
CTGTCCAAAGGAGATATCTCAACAATGTGGTTTTTTTCACTGGGCTGATGAACTCGAACCATCCGATGATGGACATGAAGATGAACTAAACTTAATCCGCAACGAGTGCA
TTCGTCTACAAGAAAGATTAGACGAAATCGACGATGAACATGATATTGAAAGAGCCGAGTGGTTAAGGGAAAAGGATGAGCTAACATTGAAACTATTCACTCTGCAAACT
GAGCTCGATGATATTCGGAATAGAATAAGGATGGCAAATGAACCCTTGTCAATGCCTCCTTTCGATTCACTTTCCATTAGGGACGACGAGGACGAGGACGATGACGCACT
AGTTGTATATACTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTTGGGAAATTTATGAGGAATCTTATCTAGAATGTTACTGTGGAGTGCCTGCAAAACTGAGAACGTCCCTGACACAAAAAAATCCATTCAGGTTATTCTACAA
CTGTCCAAAGGAGATATCTCAACAATGTGGTTTTTTTCACTGGGCTGATGAACTCGAACCATCCGATGATGGACATGAAGATGAACTAAACTTAATCCGCAACGAGTGCA
TTCGTCTACAAGAAAGATTAGACGAAATCGACGATGAACATGATATTGAAAGAGCCGAGTGGTTAAGGGAAAAGGATGAGCTAACATTGAAACTATTCACTCTGCAAACT
GAGCTCGATGATATTCGGAATAGAATAAGGATGGCAAATGAACCCTTGTCAATGCCTCCTTTCGATTCACTTTCCATTAGGGACGACGAGGACGAGGACGATGACGCACT
AGTTGTATATACTTTGTAA
Protein sequenceShow/hide protein sequence
MSSWEIYEESYLECYCGVPAKLRTSLTQKNPFRLFYNCPKEISQQCGFFHWADELEPSDDGHEDELNLIRNECIRLQERLDEIDDEHDIERAEWLREKDELTLKLFTLQT
ELDDIRNRIRMANEPLSMPPFDSLSIRDDEDEDDDALVVYTL