; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004066 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004066
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Genome locationscaffold4:1986544..1989387
RNA-Seq ExpressionSpg004066
SyntenySpg004066
Gene Ontology termsGO:0009787 - regulation of abscisic acid-activated signaling pathway (biological process)
GO:0010100 - negative regulation of photomorphogenesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039324 - Protein SHORT HYPOCOTYL IN WHITE LIGHT 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588721.1 Protein SHORT HYPOCOTYL IN WHITE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia]4.4e-4254.68Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS PAALSP SL+SIP SQ   PTSR S+LSH  QISHTLLRASRRTSNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ
                                     VGFSVNGVLML FLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+L DDQHHAWTGAQ
Subjt:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ

Query:  PAS
        PAS
Subjt:  PAS

XP_008455053.1 PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo]2.3e-4355.45Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS PA LSP SLFSIPQSQPPFPTSR SLLSHPFQIS+TLLRA+RRTSNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  ----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQP
                                    V FSVNGVLML FLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYLQD RSHR +Q  DDQHHAWTGAQP
Subjt:  ----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQP

Query:  AS
        AS
Subjt:  AS

XP_022927841.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata]4.4e-4254.68Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS PAALSP SL+SIP SQ   PTSR S+LSH  QISHTLLRASRRTSNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ
                                     VGFSVNGVLML FLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+L DDQHHAWTGAQ
Subjt:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ

Query:  PAS
        PAS
Subjt:  PAS

XP_022988955.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]3.6e-4455.67Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS PAALSP SL+SIP SQPP PTSR S+LSH  QISHTLLRASRRTSNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ
                                     VGFSVNGVLML FLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+L DDQHHAWTGAQ
Subjt:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ

Query:  PAS
        PAS
Subjt:  PAS

XP_038877542.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida]6.2e-4455.88Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS  AALSP SLFSIPQSQPPFPTSR SLLSHPFQISHTLLRASRRTSNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  ------------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGA
                                      VGFSVNGVLML FLWVLKAFLEVICTLGTAVF+SILIIRGVWTGILYLQD R+HR DQL DDQH AWTGA
Subjt:  ------------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGA

Query:  QPAS
        QP S
Subjt:  QPAS

TrEMBL top hitse value%identityAlignment
A0A1S3C0Q8 uncharacterized protein LOC1034953231.1e-4355.45Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS PA LSP SLFSIPQSQPPFPTSR SLLSHPFQIS+TLLRA+RRTSNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  ----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQP
                                    V FSVNGVLML FLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYLQD RSHR +Q  DDQHHAWTGAQP
Subjt:  ----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQP

Query:  AS
        AS
Subjt:  AS

A0A6J1D3L5 protein SHORT HYPOCOTYL IN WHITE LIGHT 12.1e-4255.34Show/hide
Query:  MSFPAALSPSSLFSIPQ--SQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ----------------------------------------------
        MSFPAALSP SLFSIPQ   QP F +SR SLLSHPFQISHTLLRASRR SNFSQ                                              
Subjt:  MSFPAALSPSSLFSIPQ--SQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ----------------------------------------------

Query:  --------------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWT
                                        VGFSVNGVLML FLWVLKAFL+VICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQL ++QHHAWT
Subjt:  --------------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWT

Query:  GAQPAS
        GAQPAS
Subjt:  GAQPAS

A0A6J1EIN7 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like2.1e-4254.68Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS PAALSP SL+SIP SQ   PTSR S+LSH  QISHTLLRASRRTSNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ
                                     VGFSVNGVLML FLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+L DDQHHAWTGAQ
Subjt:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ

Query:  PAS
        PAS
Subjt:  PAS

A0A6J1GJK6 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like2.0e-4053.2Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS  AA SP SLF++PQ QPPFPTSR  LLSHPFQ+SH LLRASRR SNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ
                                     VGF VNGVLML FLWVLKAFLEVICTLGTAVFVSILIIRGVW GILYLQDIRSHR DQL DDQ HAWTGAQ
Subjt:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ

Query:  PAS
        PAS
Subjt:  PAS

A0A6J1JL13 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like1.7e-4455.67Show/hide
Query:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------
        MS PAALSP SL+SIP SQPP PTSR S+LSH  QISHTLLRASRRTSNFSQ                                                
Subjt:  MSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISHTLLRASRRTSNFSQ------------------------------------------------

Query:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ
                                     VGFSVNGVLML FLW+LKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFD+L DDQHHAWTGAQ
Subjt:  -----------------------------VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQ

Query:  PAS
        PAS
Subjt:  PAS

SwissProt top hitse value%identityAlignment
F4I3V6 Protein SHORT HYPOCOTYL IN WHITE LIGHT 15.0e-0440.85Show/hide
Query:  QISHTLLRASRRTSNFSQ----VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ
        ++S    +ASRR    +     V F+V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Subjt:  QISHTLLRASRRTSNFSQ----VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ

Arabidopsis top hitse value%identityAlignment
AT1G69935.1 short hypocotyl in white light13.5e-0540.85Show/hide
Query:  QISHTLLRASRRTSNFSQ----VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ
        ++S    +ASRR    +     V F+V+G+L+L  L + +AFLEVIC LG  VF  IL+IR  W    + Q
Subjt:  QISHTLLRASRRTSNFSQ----VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ

AT4G33780.1 FUNCTIONS IN: molecular_function unknown1.2e-2164.86Show/hide
Query:  VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQPAS
        VGFSVNGVL+L FLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q+ R++R ++L DD   AW G QP S
Subjt:  VGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQPAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGTTTTCGGTGCGTAAAGTCGCAACCCTTTTATTACTTACTTATGAAAAAAAGAAAAAAAGAAAAAAAGAAAAACAAAAAGAAAAAAGAGTCCTTTTATGAAAA
AAAAAGGCCAAAAATCATCAGCAACTGTCAACCATCATTTTTGCTGAACAGATACAAAAGCACCTGGCAAAGGCTGGAAAATTCTCTTCTTCTTCAACAGCTGACTATGT
CCTTTCCCGCCGCTCTTTCGCCGTCGTCCCTCTTCTCCATACCCCAATCTCAACCGCCATTTCCAACCTCTCGAGCTTCGCTTCTTTCCCATCCCTTCCAAATTTCTCAC
ACACTCCTCCGGGCTTCAAGAAGAACCTCCAATTTCTCTCAGGTGGGATTTTCTGTCAATGGGGTGCTAATGCTGACGTTTTTGTGGGTTTTGAAGGCATTTCTTGAGGT
GATATGCACACTTGGAACTGCTGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTTGATCAACTCG
GTGATGATCAGCACCATGCCTGGACTGGTGCACAACCTGCATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGTTTTCGGTGCGTAAAGTCGCAACCCTTTTATTACTTACTTATGAAAAAAAGAAAAAAAGAAAAAAAGAAAAACAAAAAGAAAAAAGAGTCCTTTTATGAAAA
AAAAAGGCCAAAAATCATCAGCAACTGTCAACCATCATTTTTGCTGAACAGATACAAAAGCACCTGGCAAAGGCTGGAAAATTCTCTTCTTCTTCAACAGCTGACTATGT
CCTTTCCCGCCGCTCTTTCGCCGTCGTCCCTCTTCTCCATACCCCAATCTCAACCGCCATTTCCAACCTCTCGAGCTTCGCTTCTTTCCCATCCCTTCCAAATTTCTCAC
ACACTCCTCCGGGCTTCAAGAAGAACCTCCAATTTCTCTCAGGTGGGATTTTCTGTCAATGGGGTGCTAATGCTGACGTTTTTGTGGGTTTTGAAGGCATTTCTTGAGGT
GATATGCACACTTGGAACTGCTGTGTTTGTGAGCATACTTATCATTCGTGGAGTGTGGACTGGCATCTTATATCTACAAGATATCCGCAGCCACAGATTTGATCAACTCG
GTGATGATCAGCACCATGCCTGGACTGGTGCACAACCTGCATCCTGA
Protein sequenceShow/hide protein sequence
MCSFRCVKSQPFYYLLMKKRKKEKKKNKKKKESFYEKKRPKIISNCQPSFLLNRYKSTWQRLENSLLLQQLTMSFPAALSPSSLFSIPQSQPPFPTSRASLLSHPFQISH
TLLRASRRTSNFSQVGFSVNGVLMLTFLWVLKAFLEVICTLGTAVFVSILIIRGVWTGILYLQDIRSHRFDQLGDDQHHAWTGAQPAS