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Spg004109 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004109
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionINVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages;
Genome locationscaffold4:2004782..2006720
RNA-Seq ExpressionSpg004109
SyntenySpg004109
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588719.1 hypothetical protein SDJN03_17284, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1165.38Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQ+ILMALA+TLN+FASSNVQSVQ+NK   P T TA  + +S I RRGL+LSA  AA       AVDSRT LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

XP_004136934.1 uncharacterized protein LOC101214221 [Cucumis sativus]1.0e-1170.51Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQSILMALAVTLNKFASSNVQSVQ+NK      ATA A  +S IGRR LLLS +A A+A A    VDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

XP_008455049.1 PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo]1.0e-1167.95Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQSILMALAVTLNKFASSNVQSVQ+NK        A A  +S IGRR LLLS +A A+  A   AVDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

XP_022148828.1 uncharacterized protein LOC111017388 isoform X1 [Momordica charantia]6.6e-1167.95Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQSILMALAVT+NKFASSNVQSV +N+        +AAA AS IGRRGLL SA+AAA A      VDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

XP_038887440.1 uncharacterized protein LOC120077574 [Benincasa hispida]1.1e-1882.05Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQSILMALAVTLNKFASSNVQSVQ+N+ N+P TATA     S IGRRGLLLSA+AAAAAT PEEAVDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

TrEMBL top hitse value%identityAlignment
A0A1S3C176 uncharacterized protein LOC1034953194.9e-1267.95Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQSILMALAVTLNKFASSNVQSVQ+NK        A A  +S IGRR LLLS +A A+  A   AVDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

A0A6J1D554 uncharacterized protein LOC111017388 isoform X23.2e-1167.95Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQSILMALAVT+NKFASSNVQSV +N+        +AAA AS IGRRGLL SA+AAA A      VDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

A0A6J1D574 uncharacterized protein LOC111017388 isoform X13.2e-1167.95Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQSILMALAVT+NKFASSNVQSV +N+        +AAA AS IGRRGLL SA+AAA A      VDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

A0A6J1EM63 uncharacterized protein LOC1114346159.3e-1163.41Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTAT----AAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQ+ILMALA+TLN+FASSNVQSVQ+NK   P T T    A+ + +S I RRGLLLSA  AA       AVDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTAT----AAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

A0A6J1JNZ7 uncharacterized protein LOC1114862015.4e-1166.67Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSIGQ+ILMALA+TLN+FASSNVQSVQ+NK   P T TA  + +S I RRGLLLSA  AA       AVDSRT+LLK
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49975.1 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1.0e-0648.72Show/hide
Query:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK
        MSSI QSILMAL VT+NK+ASSNVQ+V++N   R S      A  + +GRR +L S+ +  AA     A+ S  QLL+
Subjt:  MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCATCGGCCAAAGCATTCTGATGGCTCTCGCCGTCACTCTCAACAAATTCGCTTCCTCAAACGTTCAATCTGTTCAGAAAAACAAACTCAACAGACCATCTAC
TGCCACCGCCGCCGCCGCCGGCGCTTCTCAAATTGGAAGAAGAGGCCTCCTCTTGTCTGCCATCGCCGCCGCCGCCGCCACCGCTCCTGAAGAAGCCGTCGACTCCAGAA
CCCAACTGCTAAAAAGTGTGCAGCATTCTTCTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCCATCGGCCAAAGCATTCTGATGGCTCTCGCCGTCACTCTCAACAAATTCGCTTCCTCAAACGTTCAATCTGTTCAGAAAAACAAACTCAACAGACCATCTAC
TGCCACCGCCGCCGCCGCCGGCGCTTCTCAAATTGGAAGAAGAGGCCTCCTCTTGTCTGCCATCGCCGCCGCCGCCGCCACCGCTCCTGAAGAAGCCGTCGACTCCAGAA
CCCAACTGCTAAAAAGTGTGCAGCATTCTTCTCTCTGA
Protein sequenceShow/hide protein sequence
MSSIGQSILMALAVTLNKFASSNVQSVQKNKLNRPSTATAAAAGASQIGRRGLLLSAIAAAAATAPEEAVDSRTQLLKSVQHSSL