; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004131 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004131
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein putative ty3-gypsy sub-class
Genome locationscaffold9:14144872..14156584
RNA-Seq ExpressionSpg004131
SyntenySpg004131
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON50458.1 hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii]6.2e-0936.44Show/hide
Query:  TSYELGLQTTNGISAINSLFNLQDF--PHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRD
        T Y  G+Q      AIN+++ L D    H+ + E +  P   +L   +  V I GA+W +S     T   + LN  A  W  F+K  LLPTTH  IVS++
Subjt:  TSYELGLQTTNGISAINSLFNLQDF--PHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRD

Query:  RVLLVFAILRSLSIDVGK
        RVLL++++L   SI++G+
Subjt:  RVLLVFAILRSLSIDVGK

PON62892.1 hypothetical protein PanWU01x14_135680 [Parasponia andersonii]1.1e-1038.79Show/hide
Query:  TSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRV
        T Y  G+Q      AIN+++ L D P   ++E V A +  +L T +  V I GA+W +S     T   + LN  A  W  F+K  LLPTTH   VS++RV
Subjt:  TSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRV

Query:  LLVFAILRSLSIDVGK
        LL++++L   SI+VG+
Subjt:  LLVFAILRSLSIDVGK

PON70375.1 hypothetical protein PanWU01x14_080440 [Parasponia andersonii]1.1e-0836.21Show/hide
Query:  TSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRV
        T Y  G+Q    + AIN++F+L D P   ++E V   +  +L   +  V I GA+W +S     T   + LN  A  W  F+K  LLPTTH   VS++ V
Subjt:  TSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRV

Query:  LLVFAILRSLSIDVGK
         L++++L   SI+VG+
Subjt:  LLVFAILRSLSIDVGK

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]1.5e-1024.22Show/hide
Query:  HTSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDR
        +T Y  G+Q +    AIN++F L D P   ++E +   +  +L T +  V   GA+W +S     T   + L   A  W  F+K  LLPTTH  IVS+DR
Subjt:  HTSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDR

Query:  VLLVFAILRSLSIDVGK-----------------------------------------------------------------------------------
        +LL+ ++L   SI+VG+                                                                                   
Subjt:  VLLVFAILRSLSIDVGK-----------------------------------------------------------------------------------

Query:  -------------EYAERQAQTYWTYAKRRDATLRTALQSNFSKPYQAFPIFPDDL
                     E+  +Q Q +W Y+K RD  L+ ALQ+NF++P   FP FP ++
Subjt:  -------------EYAERQAQTYWTYAKRRDATLRTALQSNFSKPYQAFPIFPDDL

XP_038876674.1 chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]4.3e-1027.87Show/hide
Query:  TCHARKIERPSRWTTHIKHLPEVVRKVVEDLIEVVAGEEQPKEPKEGKNSEQGDQHAETQQEVQEKQAEDVSEQGNGEGTQEQQVHAEIVSEPPRHRRCK
        T +A+  ++PSR       + EV  + VE  +EVV   E+ K+ K+ K  + G    E  +E + ++ E+  E+ N +  +E+++  E   +   +RRC 
Subjt:  TCHARKIERPSRWTTHIKHLPEVVRKVVEDLIEVVAGEEQPKEPKEGKNSEQGDQHAETQQEVQEKQAEDVSEQGNGEGTQEQQVHAEIVSEPPRHRRCK

Query:  QKVGRIKVVTTYTPSPSTTESEKENTEREDQEKEETEKEALTKQQETEAKELLKQQSKHRISSCLKEDSVM-------IYHTSYELGL-QTTNGISA--I
        QK                    K+  E  ++EKEE  KE   KQ++     L K++ K  I    K  SV+       ++ T   + L + T   SA  I
Subjt:  QKVGRIKVVTTYTPSPSTTESEKENTEREDQEKEETEKEALTKQQETEAKELLKQQSKHRISSCLKEDSVM-------IYHTSYELGL-QTTNGISA--I

Query:  NSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRVLLVFAILRSLSIDVGK
        N ++ ++D P+   N+++  P+  Q+   ++ +   G +W +S     T  +  L  E   W+  +K  L+ TTHD  VSRDRV+  + I+RS+ IDVG+
Subjt:  NSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRVLLVFAILRSLSIDVGK

Query:  EYAER
          A +
Subjt:  EYAER

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)8.8e-0935.29Show/hide
Query:  IYHTSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSR
        + +T Y  G+Q +    AIN++F L D P   ++E +   +   L T +  V + GA+W +S     T   + L   A  W  F+K  LLPTTH   VS+
Subjt:  IYHTSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSR

Query:  DRVLLVFAILRSLSIDVGK
        DR+LL+ ++L   SI+VG+
Subjt:  DRVLLVFAILRSLSIDVGK

A0A2P5BNT0 Uncharacterized protein (Fragment)3.0e-0936.44Show/hide
Query:  TSYELGLQTTNGISAINSLFNLQDF--PHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRD
        T Y  G+Q      AIN+++ L D    H+ + E +  P   +L   +  V I GA+W +S     T   + LN  A  W  F+K  LLPTTH  IVS++
Subjt:  TSYELGLQTTNGISAINSLFNLQDF--PHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRD

Query:  RVLLVFAILRSLSIDVGK
        RVLL++++L   SI++G+
Subjt:  RVLLVFAILRSLSIDVGK

A0A2P5CPE8 Uncharacterized protein5.5e-1138.79Show/hide
Query:  TSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRV
        T Y  G+Q      AIN+++ L D P   ++E V A +  +L T +  V I GA+W +S     T   + LN  A  W  F+K  LLPTTH   VS++RV
Subjt:  TSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRV

Query:  LLVFAILRSLSIDVGK
        LL++++L   SI+VG+
Subjt:  LLVFAILRSLSIDVGK

A0A2P5DAQ2 Uncharacterized protein5.2e-0936.21Show/hide
Query:  TSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRV
        T Y  G+Q    + AIN++F+L D P   ++E V   +  +L   +  V I GA+W +S     T   + LN  A  W  F+K  LLPTTH   VS++ V
Subjt:  TSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRV

Query:  LLVFAILRSLSIDVGK
         L++++L   SI+VG+
Subjt:  LLVFAILRSLSIDVGK

A0A2P5DXM3 Uncharacterized protein7.2e-1124.22Show/hide
Query:  HTSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDR
        +T Y  G+Q +    AIN++F L D P   ++E +   +  +L T +  V   GA+W +S     T   + L   A  W  F+K  LLPTTH  IVS+DR
Subjt:  HTSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIEGAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDR

Query:  VLLVFAILRSLSIDVGK-----------------------------------------------------------------------------------
        +LL+ ++L   SI+VG+                                                                                   
Subjt:  VLLVFAILRSLSIDVGK-----------------------------------------------------------------------------------

Query:  -------------EYAERQAQTYWTYAKRRDATLRTALQSNFSKPYQAFPIFPDDL
                     E+  +Q Q +W Y+K RD  L+ ALQ+NF++P   FP FP ++
Subjt:  -------------EYAERQAQTYWTYAKRRDATLRTALQSNFSKPYQAFPIFPDDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CATGTACAAAGGCATGAATCTCAGCCTTGGCCGAATCATTTAGACGGAGATCCTTGCCTGTGGGCACAAGAACGTAGGAAGGTTATTCTTCCCAAGTCTGATCACAATGT
TATGCGGGCTGGCGTCGAGCCCGAGGAGAAAGAAGAGAAGGAAGTCGCCAGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGGATTGTCCTTCGATTAGCAT
GGGTGAGAGTGGCCAATACGGCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTT
CTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCATCAATTGGTGGTGTCCCAATTGTTGACGCTTGGTCCAAATCAAGAAAGGCGTTCTTGATATTTCA
GAGACGACAACAACGGACTTCAATAGAATTGAGCTTGATCAAGAAGCTCATTACAAATGCACGACTGAAGGTGACCTCCCCCGAGAAGAAAGCTCAAACCACTCCTCCTG
TTGGATTTTATGCCCTAAAACTCGTAGATAGTGTGAGATTGGTGCATGAGCGATCCGCATGGGGTAAAACTCATGGAACATCTGGTGCTTCCACGTGTCACGCAAGAAAG
ATCGAACGACCTAGCCGTTGGACAACACACATCAAACATTTACCAGAAGTGGTGAGAAAAGTAGTCGAAGATCTTATAGAAGTAGTGGCTGGAGAAGAGCAGCCAAAAGA
ACCTAAAGAAGGGAAAAATTCAGAACAGGGTGATCAACATGCCGAAACTCAGCAGGAAGTTCAGGAAAAGCAAGCAGAAGATGTGTCGGAACAAGGGAATGGTGAAGGAA
CCCAAGAGCAGCAGGTTCATGCAGAGATTGTGTCGGAACCACCGCGTCATCGCCGCTGCAAGCAAAAGGTGGGACGAATTAAGGTGGTTACGACATACACTCCATCTCCG
TCAACAACAGAATCTGAAAAGGAGAATACAGAAAGGGAGGATCAAGAGAAAGAGGAAACTGAAAAGGAGGCCCTGACGAAGCAACAAGAAACAGAGGCAAAGGAGTTGTT
GAAGCAACAGTCGAAGCATAGGATCAGTTCTTGTTTGAAAGAGGATTCGGTGATGATTTACCACACTTCTTACGAGCTAGGATTACAAACCACAAATGGGATCAGTGCGA
TCAACTCTCTATTTAATCTTCAGGATTTTCCACACACCGGATACAATGAGATGGTGGTAGCACCATCTAATGATCAGTTGAACACGCCTGTGAGAGAAGTTGGAATTGAG
GGGGCACAGTGGAGGTTGTCAAAAACAGAGAAATGCACATTTCAAGCAGCTTATTTGAATAGCGAAGCCAACACCTGGTTGGGCTTCATCAAATTGTGTCTTCTACCGAC
AACCCACGATTCTATAGTCTCTCGAGATAGAGTTCTTTTGGTCTTTGCGATTCTAAGATCCTTGAGTATTGATGTTGGTAAGGAGTATGCTGAGAGGCAAGCTCAGACCT
ACTGGACTTATGCTAAGAGGAGGGATGCCACTCTAAGGACGGCACTGCAATCAAATTTTTCAAAGCCATATCAAGCCTTCCCAATTTTCCCCGATGACTTGTTCAATCCT
TGGATCCCGCCACCACCAGTTGAAAGATAG
mRNA sequenceShow/hide mRNA sequence
CATGTACAAAGGCATGAATCTCAGCCTTGGCCGAATCATTTAGACGGAGATCCTTGCCTGTGGGCACAAGAACGTAGGAAGGTTATTCTTCCCAAGTCTGATCACAATGT
TATGCGGGCTGGCGTCGAGCCCGAGGAGAAAGAAGAGAAGGAAGTCGCCAGTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGGATTGTCCTTCGATTAGCAT
GGGTGAGAGTGGCCAATACGGCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTT
CTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCATCAATTGGTGGTGTCCCAATTGTTGACGCTTGGTCCAAATCAAGAAAGGCGTTCTTGATATTTCA
GAGACGACAACAACGGACTTCAATAGAATTGAGCTTGATCAAGAAGCTCATTACAAATGCACGACTGAAGGTGACCTCCCCCGAGAAGAAAGCTCAAACCACTCCTCCTG
TTGGATTTTATGCCCTAAAACTCGTAGATAGTGTGAGATTGGTGCATGAGCGATCCGCATGGGGTAAAACTCATGGAACATCTGGTGCTTCCACGTGTCACGCAAGAAAG
ATCGAACGACCTAGCCGTTGGACAACACACATCAAACATTTACCAGAAGTGGTGAGAAAAGTAGTCGAAGATCTTATAGAAGTAGTGGCTGGAGAAGAGCAGCCAAAAGA
ACCTAAAGAAGGGAAAAATTCAGAACAGGGTGATCAACATGCCGAAACTCAGCAGGAAGTTCAGGAAAAGCAAGCAGAAGATGTGTCGGAACAAGGGAATGGTGAAGGAA
CCCAAGAGCAGCAGGTTCATGCAGAGATTGTGTCGGAACCACCGCGTCATCGCCGCTGCAAGCAAAAGGTGGGACGAATTAAGGTGGTTACGACATACACTCCATCTCCG
TCAACAACAGAATCTGAAAAGGAGAATACAGAAAGGGAGGATCAAGAGAAAGAGGAAACTGAAAAGGAGGCCCTGACGAAGCAACAAGAAACAGAGGCAAAGGAGTTGTT
GAAGCAACAGTCGAAGCATAGGATCAGTTCTTGTTTGAAAGAGGATTCGGTGATGATTTACCACACTTCTTACGAGCTAGGATTACAAACCACAAATGGGATCAGTGCGA
TCAACTCTCTATTTAATCTTCAGGATTTTCCACACACCGGATACAATGAGATGGTGGTAGCACCATCTAATGATCAGTTGAACACGCCTGTGAGAGAAGTTGGAATTGAG
GGGGCACAGTGGAGGTTGTCAAAAACAGAGAAATGCACATTTCAAGCAGCTTATTTGAATAGCGAAGCCAACACCTGGTTGGGCTTCATCAAATTGTGTCTTCTACCGAC
AACCCACGATTCTATAGTCTCTCGAGATAGAGTTCTTTTGGTCTTTGCGATTCTAAGATCCTTGAGTATTGATGTTGGTAAGGAGTATGCTGAGAGGCAAGCTCAGACCT
ACTGGACTTATGCTAAGAGGAGGGATGCCACTCTAAGGACGGCACTGCAATCAAATTTTTCAAAGCCATATCAAGCCTTCCCAATTTTCCCCGATGACTTGTTCAATCCT
TGGATCCCGCCACCACCAGTTGAAAGATAG
Protein sequenceShow/hide protein sequence
HVQRHESQPWPNHLDGDPCLWAQERRKVILPKSDHNVMRAGVEPEEKEEKEVASVGFYALKLVDSEWIVLRLAWVRVANTATQYAFLFGDKTEWEAGDMTTQEGIHSFPL
LGEVDECPLGPPASSSIGGVPIVDAWSKSRKAFLIFQRRQQRTSIELSLIKKLITNARLKVTSPEKKAQTTPPVGFYALKLVDSVRLVHERSAWGKTHGTSGASTCHARK
IERPSRWTTHIKHLPEVVRKVVEDLIEVVAGEEQPKEPKEGKNSEQGDQHAETQQEVQEKQAEDVSEQGNGEGTQEQQVHAEIVSEPPRHRRCKQKVGRIKVVTTYTPSP
STTESEKENTEREDQEKEETEKEALTKQQETEAKELLKQQSKHRISSCLKEDSVMIYHTSYELGLQTTNGISAINSLFNLQDFPHTGYNEMVVAPSNDQLNTPVREVGIE
GAQWRLSKTEKCTFQAAYLNSEANTWLGFIKLCLLPTTHDSIVSRDRVLLVFAILRSLSIDVGKEYAERQAQTYWTYAKRRDATLRTALQSNFSKPYQAFPIFPDDLFNP
WIPPPPVER