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Spg004134 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004134
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:13923879..13928201
RNA-Seq ExpressionSpg004134
SyntenySpg004134
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037768.1 reverse transcriptase [Cucumis melo var. makuwa]2.7e-0776.19Show/hide
Query:  QESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        Q+SI EEKS VE SRG   ASGFRGREQRRFTPG+N+SSR+D
Subjt:  QESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
KAA0056288.1 uncharacterized protein E6C27_scaffold226G00600 [Cucumis melo var. makuwa]2.7e-0769.57Show/hide
Query:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        A + ++SI EEKS VE SRG   ASGFRGREQRRFTPG+N+SSR+D
Subjt:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
KAA0061627.1 putative polyprotein [Cucumis melo var. makuwa]2.1e-0778.57Show/hide
Query:  QESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        Q+SI EEKS VE SRG   ASGFRGREQRRFTPGVN+SSR+D
Subjt:  QESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
KAA0062248.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-0769.57Show/hide
Query:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        A + ++SI EEKS VE SRG   ASGFRGREQRRFTPG+N+SSR+D
Subjt:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
TYK27290.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-0769.57Show/hide
Query:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        A + ++SI EEKS VE SRG   ASGFRGREQRRFTPG+N+SSR+D
Subjt:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
TrEMBL top hitse value%identityAlignment
A0A5A7T4N0 Reverse transcriptase1.3e-0776.19Show/hide
Query:  QESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        Q+SI EEKS VE SRG   ASGFRGREQRRFTPG+N+SSR+D
Subjt:  QESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
A0A5A7V3R5 DNA/RNA polymerases superfamily protein1.3e-0769.57Show/hide
Query:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        A + ++SI EEKS VE SRG   ASGFRGREQRRFTPG+N+SSR+D
Subjt:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
A0A5A7V411 Putative polyprotein1.0e-0778.57Show/hide
Query:  QESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        Q+SI EEKS VE SRG   ASGFRGREQRRFTPGVN+SSR+D
Subjt:  QESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
A0A5D3BZQ5 Retrotrans_gag domain-containing protein1.3e-0769.57Show/hide
Query:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        A + ++SI EEKS VE SRG   ASGFRGREQRRFTPG+N+SSR+D
Subjt:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
A0A5D3DVI2 DNA/RNA polymerases superfamily protein1.0e-0769.57Show/hide
Query:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
        A + ++SI EEKS VE SRG   ASGFRGREQRRFTPG+N+SSR+D
Subjt:  ARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAATGGTCCTAAGTAATCCTATCCGTCTCAGGAGTTTGCGTTGTTCCGATCTCCATGTTACAACCCTCCGAATGGACGAGACGCAGGATCCTACCCTGACTCA
ATCTGAAAAGGGATCTAGTACCCTGAGAGGTCAGAATGAGGCAGGGAGTGAGCAGTTTGCTAGATATGCACAGGAGAGTATAATAGAGGAAAAGTCGACAGTGGAGCCTA
GTCGTGGAGCTCCAAAAGCTAGTGGTTTCCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAAGCCGTAAAGACAAGAATGTTTCGATCTGGTGGCCA
GTCATCGAGGAAGATGAGTTCGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAATGGTCCTAAGTAATCCTATCCGTCTCAGGAGTTTGCGTTGTTCCGATCTCCATGTTACAACCCTCCGAATGGACGAGACGCAGGATCCTACCCTGACTCA
ATCTGAAAAGGGATCTAGTACCCTGAGAGGTCAGAATGAGGCAGGGAGTGAGCAGTTTGCTAGATATGCACAGGAGAGTATAATAGAGGAAAAGTCGACAGTGGAGCCTA
GTCGTGGAGCTCCAAAAGCTAGTGGTTTCCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAAGCCGTAAAGACAAGAATGTTTCGATCTGGTGGCCA
GTCATCGAGGAAGATGAGTTCGGGTAG
Protein sequenceShow/hide protein sequence
MLEMVLSNPIRLRSLRCSDLHVTTLRMDETQDPTLTQSEKGSSTLRGQNEAGSEQFARYAQESIIEEKSTVEPSRGAPKASGFRGREQRRFTPGVNVSSRKDKNVSIWWP
VIEEDEFG