CuGenDBv2

Gene ID	Spg004144
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	poly(A)-specific ribonuclease PARN-like
Genome location	scaffold9:14505892..14507216
RNA-Seq Expression	Spg004144
Synteny	Spg004144
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_016903395.1 PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis melo]

2.0e-34

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Query:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH
        R L++T+T QWS++Q+RNSNFHGCL D KNHISDSDF+A  LQ TGSSSFPWHR QP DT +      KY AEK                      YNFH
Subjt:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH

Query:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPYYGLFTLV
        LFPRDELNIGMPS          TS+ARE FDF A +YDGKP  G FT V
Subjt:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPYYGLFTLV

XP_023547854.1 poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita pepo subsp. pepo]

5.7e-34

59.44

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Query:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH
        R    T+T+Q SVRQIRNS+F+GCL D KNHISDSDF+A SLQNTGSSSFPWHRLQ  DTY+      KY AEK                      YNFH
Subjt:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH

Query:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
        LFPRD+LNIGMPS          TSMAREGFDFDACIYDG  Y
Subjt:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

XP_023547855.1 poly(A)-specific ribonuclease PARN-like isoform X2 [Cucurbita pepo subsp. pepo]

5.7e-34

59.44

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Query:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH
        R    T+T+Q SVRQIRNS+F+GCL D KNHISDSDF+A SLQNTGSSSFPWHRLQ  DTY+      KY AEK                      YNFH
Subjt:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH

Query:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
        LFPRD+LNIGMPS          TSMAREGFDFDACIYDG  Y
Subjt:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

XP_038899638.1 poly(A)-specific ribonuclease PARN-like isoform X1 [Benincasa hispida]

1.6e-36

62.32

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Query:  TSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFHLFPRD
        T+TSQWSVRQ+R+S+FHGCL + KNHISDSDF+A SLQNTGSSSFPWHRLQP DTY+      KY AEK                      YNFHLFPRD
Subjt:  TSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFHLFPRD

Query:  ELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
        ELNIGMPS          TSMAREGFDFDACIYDG  Y
Subjt:  ELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

XP_038899639.1 poly(A)-specific ribonuclease PARN-like isoform X2 [Benincasa hispida]

1.6e-36

62.32

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Query:  TSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFHLFPRD
        T+TSQWSVRQ+R+S+FHGCL + KNHISDSDF+A SLQNTGSSSFPWHRLQP DTY+      KY AEK                      YNFHLFPRD
Subjt:  TSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFHLFPRD

Query:  ELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
        ELNIGMPS          TSMAREGFDFDACIYDG  Y
Subjt:  ELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BT38 poly(A)-specific ribonuclease PARN-like

4.0e-33

55.94

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Query:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH
        R L++T+T QWS++Q+RNSNFH CL D KNHISDSDF+A SLQ TGSSSFPWHR QP DT +      KY AEK                      YNFH
Subjt:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH

Query:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
        LFPRDELNIGMPS          TS+AREGFDF A +YDG  Y
Subjt:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

A0A1S4E5Z5 poly(A)-specific ribonuclease PARN-like

9.5e-35

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Query:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH
        R L++T+T QWS++Q+RNSNFHGCL D KNHISDSDF+A  LQ TGSSSFPWHR QP DT +      KY AEK                      YNFH
Subjt:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH

Query:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPYYGLFTLV
        LFPRDELNIGMPS          TS+ARE FDF A +YDGKP  G FT V
Subjt:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPYYGLFTLV

A0A5A7V1F6 Poly(A)-specific ribonuclease PARN-like

8.0e-34

56.64

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Query:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH
        R L++T+T QWS++Q+RNSNFHGCL D KNHISDSDF+A SLQ TGSSSFPWHR QP DT +      KY AEK                      YNFH
Subjt:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH

Query:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
        LFPRDELNIGMPS          TS+AREGFDF A +YDG  Y
Subjt:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

A0A6J1GP80 poly(A)-specific ribonuclease PARN-like isoform X1

6.1e-34

58.74

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Query:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH
        R    T+T+Q SVRQIRN++F+GCL D KNHISDSDF+A SLQNTGSSSFPWHRLQ  DTY+      KY AEK                      YNFH
Subjt:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH

Query:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
        LFPRD+LNIGMPS          TSMAREGFDFDACIYDG  Y
Subjt:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

A0A6J1GQJ8 poly(A)-specific ribonuclease PARN-like isoform X2

6.1e-34

58.74

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Query:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH
        R    T+T+Q SVRQIRN++F+GCL D KNHISDSDF+A SLQNTGSSSFPWHRLQ  DTY+      KY AEK                      YNFH
Subjt:  RHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK----------------------YNFH

Query:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
        LFPRD+LNIGMPS          TSMAREGFDFDACIYDG  Y
Subjt:  LFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

SwissProt top hits

e value

%identity

Alignment

Q8W4C3 Poly(A)-specific ribonuclease PARN-like

3.6e-23

41.22

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Query:  LSPVARHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK---------------------
        +S  A +  + +  +WSV+Q++ SNFH  L++ +  I  SDF+A SLQNTGS +  WHR+  +DT +      KY AE+                     
Subjt:  LSPVARHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK---------------------

Query:  -YNFHLFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
         YNFHLFPRDEL  GMPS          T+MAREGFDF+ CIY+G  Y
Subjt:  -YNFHLFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

Q9LG26 Poly(A)-specific ribonuclease PARN

2.1e-07

28.37

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Query:  STSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEKY------------------------NFHLF
        +++T+ + ++ +  SNF   L D ++ +  +DF+A  L+ TG +S PW      D Y+      K +AEK+                        NF +F
Subjt:  STSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEKY------------------------NFHLF

Query:  PRDELNIGMPSD----MKTSM---AREGFDFDACIYDGKPY
        PR EL    P+       TSM   A+  FDF+ CI++G  Y
Subjt:  PRDELNIGMPSD----MKTSM---AREGFDFDACIYDGKPY

Arabidopsis top hits

e value

%identity

Alignment

AT1G55870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.5e-08

28.37

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Query:  STSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEKY------------------------NFHLF
        +++T+ + ++ +  SNF   L D ++ +  +DF+A  L+ TG +S PW      D Y+      K +AEK+                        NF +F
Subjt:  STSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEKY------------------------NFHLF

Query:  PRDELNIGMPSD----MKTSM---AREGFDFDACIYDGKPY
        PR EL    P+       TSM   A+  FDF+ CI++G  Y
Subjt:  PRDELNIGMPSD----MKTSM---AREGFDFDACIYDGKPY

AT3G25430.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

2.6e-24

41.22

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Query:  LSPVARHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK---------------------
        +S  A +  + +  +WSV+Q++ SNFH  L++ +  I  SDF+A SLQNTGS +  WHR+  +DT +      KY AE+                     
Subjt:  LSPVARHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYE------KYTAEK---------------------

Query:  -YNFHLFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY
         YNFHLFPRDEL  GMPS          T+MAREGFDF+ CIY+G  Y
Subjt:  -YNFHLFPRDELNIGMPS-------DMKTSMAREGFDFDACIYDGKPY

Sequences

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CDS sequence

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CAGAGAAAACGAAATTTGAATAAAAGCTTAATGGGAAACTATGGCGTCTCGGTTCTCCTTTCTCCAGTTGCAAGACACTTGTTTAGTACCAGTACCAGTCAATGGAGTGT
TAGGCAAATTCGCAACTCCAACTTCCATGGCTGTTTAGAGGATCAGAAGAACCACATCTCCGACTCCGACTTCCTCGCCCCCTCTCTGCAGAACACGGGTTCTTCTTCCT
TTCCTTGGCACCGCCTTCAGCCCTTAGACACCTACGAGAAGTACACTGCCGAGAAGTACAACTTTCACTTATTCCCCAGAGATGAATTGAACATTGGGATGCCTTCTGAC
ATGAAAACATCCATGGCTCGTGAAGGTTTTGACTTTGATGCTTGCATATATGATGGTAAGCCATATTATGGACTATTTACGTTGGTTCAAACTCACTGGTCACTAGGCTT
GAGATTCTAA

mRNA sequence

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Protein sequence

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QRKRNLNKSLMGNYGVSVLLSPVARHLFSTSTSQWSVRQIRNSNFHGCLEDQKNHISDSDFLAPSLQNTGSSSFPWHRLQPLDTYEKYTAEKYNFHLFPRDELNIGMPSD
MKTSMAREGFDFDACIYDGKPYYGLFTLVQTHWSLGLRF

Spg004144 (gene) of Sponge gourd (cylindrica) v1 genome