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Spg004146 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004146
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold9:14250422..14256468
RNA-Seq ExpressionSpg004146
SyntenySpg004146
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM93404.1 hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]1.0e-1760.53Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG
        +ADDRAR IR+YAAP     NP IV+P  +  +FELKPVMFQML   GQF G PTEDPH HL+SFL++ + F I G
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG

ERM93434.1 hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda]1.7e-1759.21Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG
        +ADDRAR IR+YAAP     N  IV+P  +   FELKPVMFQML   GQFGGSPTEDPH H++SFL++ + F + G
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG

WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]8.5e-1758.54Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFE-TERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPGDDLDN
        +A DR R +R+YA+P   NF P I+QPTFE   RFE+KPVM QML  AGQFGG+  EDPH+HLKSFL+IC+ F + G   D+
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFE-TERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPGDDLDN

XP_030497803.1 uncharacterized protein LOC115713460 [Cannabis sativa]5.9e-1859.21Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG
        +ADDR R IR+YAAP     NP IV+P  +   FELKPVMFQML   GQFGGSPTEDPH H++SFL++ + F + G
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG

XP_030508936.1 uncharacterized protein LOC115723589 [Cannabis sativa]2.0e-1860.53Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG
        +ADDRAR IR+YAAP     NP IV+P  +   FELKPVMFQML   GQFGGSPTEDPH H++SFL++ + F + G
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG

TrEMBL top hitse value%identityAlignment
A0A6J1EEI2 uncharacterized protein LOC1114333941.1e-1455Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPGDDLD
        +ADDR R IR YA PA    NP I++P  +   FELKPVMFQML   GQF G P+EDPH HLKSFL + + F     D D
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPGDDLD

A0A6J1H7E4 uncharacterized protein LOC1114611681.0e-1556.25Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPGDDLD
        +ADDR R IR YA PA    NP I++P  +   FELKPVMFQML   GQF G P+EDPH HLKSFL + + F   G D D
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPGDDLD

U5CUI2 Retrotrans_gag domain-containing protein4.9e-1860.53Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG
        +ADDRAR IR+YAAP     NP IV+P  +  +FELKPVMFQML   GQF G PTEDPH HL+SFL++ + F I G
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG

U5CUK7 Uncharacterized protein8.3e-1859.21Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG
        +ADDRAR IR+YAAP     N  IV+P  +   FELKPVMFQML   GQFGGSPTEDPH H++SFL++ + F + G
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG

W9RHB3 Putative disease resistance RPP13-like protein 11.3e-1553.95Show/hide
Query:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG
        + DDR R IRD+A P     NP IV+P  E   FELKPVMFQML I GQF G  T+DPH HL+ F+++ + F +PG
Subjt:  MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGATAGGGCCAGAGGGATCAGAGATTATGCAGCCCCTGCAAACTGTAATTTCAACCCAAGGATAGTACAACCCACCTTTGAAACAGAAAGGTTTGAGCTAAA
ACCTGTTATGTTTCAAATGCTGACTATTGCAGGACAATTCGGAGGAAGTCCAACTGAAGATCCACACTCTCATCTAAAATCATTCCTGGACATCTGTAATAAATTCATCA
TCCCAGGAGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTTTATGGCTGGGATACGAACACACGTGAA
GGACTGACTTGTAGTATTGGTCGATATCCGTGGACACAGAAATATTCTGCAGTGAGAAGAGTGCAGCTGAGGGTCTTTAGTGGAATGACCCATAGAAAAGGTATTGGCCT
TTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCCCATTGTCTCTCCTTCTCTCAGAGATTTCTCCCAAAAGACTCCCACAAGTCTCCTGCTTCAAGAAGTCT
TAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCAATCTTATTGGCAAGAAAAGGCGAATTGATCAAGGCTTTCTACAAAATGGT
TTTCCAGCTGGTTCAAGCGGTTTTGACCCATTTTTTGGCGGTTTTGACCCGGTTTGGACGGTTTTGGCACGTTTGGAGCGGTTTTGGTCCGGTTCGGAGCTGCAGTTGAC
TGGAACTCTACCGGTAAAGTTCTGTCTAAGGTTGGGGGTACTTAAGTTGACGGTTTACGGAACACCTCCTACCTGGGAACTGACCCGGAATACCGGAGTTGAATTGATCA
TGGTTAAATGGAACTCTCCCGGTTACGTTCTGTCTAAGGCTGGAGGAGGAGTAGCTGATCACCCTTCGGTGGTTGTTGCTCTTGTTGGTCACTCACCGCAAGCGTACGGG
TCGTCACAATGTCGATCTCCTCGATCCCGCGCCGACCTCCTTCGATCCCGAGCTCCAAAGATCTTCAACAAAGCTCCAAAACTCTCCCAAAAATCCCCAATTTTAGTGTG
GATTCTAGAATGGGGTGAAAACCCACAAATTGGCACACAAAACATGGATGCAAATGGCCCCTTTTATAGGCTCCCAGCAGGCGTAGCGTCGAGACGCTACGTCACAGCGT
CGCGACGCTCTGACGTCATCTTTTCTTGGGCTCCAAGACGTCGCAGCGTCGAGACGCTACCTAGACAGCGTCGCGACGCTATCGCGATTCTAGAACTCTCCACGCGGCTG
CCTAGCGTCGGGACGCTCCAGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGATAGGGCCAGAGGGATCAGAGATTATGCAGCCCCTGCAAACTGTAATTTCAACCCAAGGATAGTACAACCCACCTTTGAAACAGAAAGGTTTGAGCTAAA
ACCTGTTATGTTTCAAATGCTGACTATTGCAGGACAATTCGGAGGAAGTCCAACTGAAGATCCACACTCTCATCTAAAATCATTCCTGGACATCTGTAATAAATTCATCA
TCCCAGGAGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTTTATGGCTGGGATACGAACACACGTGAA
GGACTGACTTGTAGTATTGGTCGATATCCGTGGACACAGAAATATTCTGCAGTGAGAAGAGTGCAGCTGAGGGTCTTTAGTGGAATGACCCATAGAAAAGGTATTGGCCT
TTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCCCATTGTCTCTCCTTCTCTCAGAGATTTCTCCCAAAAGACTCCCACAAGTCTCCTGCTTCAAGAAGTCT
TAGAGATATACCGGTGTAGCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCAATCTTATTGGCAAGAAAAGGCGAATTGATCAAGGCTTTCTACAAAATGGT
TTTCCAGCTGGTTCAAGCGGTTTTGACCCATTTTTTGGCGGTTTTGACCCGGTTTGGACGGTTTTGGCACGTTTGGAGCGGTTTTGGTCCGGTTCGGAGCTGCAGTTGAC
TGGAACTCTACCGGTAAAGTTCTGTCTAAGGTTGGGGGTACTTAAGTTGACGGTTTACGGAACACCTCCTACCTGGGAACTGACCCGGAATACCGGAGTTGAATTGATCA
TGGTTAAATGGAACTCTCCCGGTTACGTTCTGTCTAAGGCTGGAGGAGGAGTAGCTGATCACCCTTCGGTGGTTGTTGCTCTTGTTGGTCACTCACCGCAAGCGTACGGG
TCGTCACAATGTCGATCTCCTCGATCCCGCGCCGACCTCCTTCGATCCCGAGCTCCAAAGATCTTCAACAAAGCTCCAAAACTCTCCCAAAAATCCCCAATTTTAGTGTG
GATTCTAGAATGGGGTGAAAACCCACAAATTGGCACACAAAACATGGATGCAAATGGCCCCTTTTATAGGCTCCCAGCAGGCGTAGCGTCGAGACGCTACGTCACAGCGT
CGCGACGCTCTGACGTCATCTTTTCTTGGGCTCCAAGACGTCGCAGCGTCGAGACGCTACCTAGACAGCGTCGCGACGCTATCGCGATTCTAGAACTCTCCACGCGGCTG
CCTAGCGTCGGGACGCTCCAGGCTTAG
Protein sequenceShow/hide protein sequence
MADDRARGIRDYAAPANCNFNPRIVQPTFETERFELKPVMFQMLTIAGQFGGSPTEDPHSHLKSFLDICNKFIIPGDDLDNSVSILSGLWTPVHEELSFDFYGWDTNTRE
GLTCSIGRYPWTQKYSAVRRVQLRVFSGMTHRKGIGLYLYIGPLGWGERHPIVSPSLRDFSQKTPTSLLLQEVLEIYRCSRLVVFAQEGCCVFNLIGKKRRIDQGFLQNG
FPAGSSGFDPFFGGFDPVWTVLARLERFWSGSELQLTGTLPVKFCLRLGVLKLTVYGTPPTWELTRNTGVELIMVKWNSPGYVLSKAGGGVADHPSVVVALVGHSPQAYG
SSQCRSPRSRADLLRSRAPKIFNKAPKLSQKSPILVWILEWGENPQIGTQNMDANGPFYRLPAGVASRRYVTASRRSDVIFSWAPRRRSVETLPRQRRDAIAILELSTRL
PSVGTLQA