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Spg004148 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004148
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUbiquitin receptor RAD23
Genome locationscaffold9:14015005..14018654
RNA-Seq ExpressionSpg004148
SyntenySpg004148
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0031593 - polyubiquitin modification-dependent protein binding (molecular function)
GO:0043130 - ubiquitin binding (molecular function)
GO:0070628 - proteasome binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462953.1 PREDICTED: ubiquitin receptor RAD23b isoform X1 [Cucumis melo]1.0e-4887.3Show/hide
Query:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA
        +R QL   VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS+SAGQSS QPAQ PPVAQP+L+STPA QVTPSP 
Subjt:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA

Query:  PAHQAPTQAPSSAPKNTTSTSDRATD
        PA QAPTQAPSSA KNTTSTSDR TD
Subjt:  PAHQAPTQAPSSAPKNTTSTSDRATD

XP_008462954.1 PREDICTED: ubiquitin receptor RAD23b isoform X2 [Cucumis melo]7.5e-4790.6Show/hide
Query:  MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQA
        MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS+SAGQSS QPAQ PPVAQP+L+STPA QVTPSP PA QAPTQA
Subjt:  MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQA

Query:  PSSAPKNTTSTSDRATD
        PSSA KNTTSTSDR TD
Subjt:  PSSAPKNTTSTSDRATD

XP_011651807.2 ubiquitin receptor RAD23b [Cucumis sativus]3.7e-4678.57Show/hide
Query:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA
        +R QL   VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS SAGQSS QPAQ PPVAQP+L+STPA QVTPSP 
Subjt:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA

Query:  PA--------------HQAPTQAPSSAPKNTTSTSDRATD
        PA               QAPTQAPSSAPKNTTSTS+R TD
Subjt:  PA--------------HQAPTQAPSSAPKNTTSTSDRATD

XP_022153480.1 ubiquitin receptor RAD23b-like [Momordica charantia]5.2e-4884.92Show/hide
Query:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA
        +R Q    VMAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS S GQSS QPAQ PPVAQP+LNSTP TQVTPSP 
Subjt:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA

Query:  PAHQAPTQAPSSAPKNTTSTSDRATD
        PA QAPTQAPSSAP+NTTSTSDR  D
Subjt:  PAHQAPTQAPSSAPKNTTSTSDRATD

XP_038906275.1 ubiquitin receptor RAD23b-like [Benincasa hispida]3.6e-4988.89Show/hide
Query:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA
        +R Q    VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSK S SAGQSS QPAQ PPVAQPILNST ATQVTPSP 
Subjt:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA

Query:  PAHQAPTQAPSSAPKNTTSTSDRATD
        PA QAPTQAPSSAPKNTTSTSDRATD
Subjt:  PAHQAPTQAPSSAPKNTTSTSDRATD

TrEMBL top hitse value%identityAlignment
A0A0A0LF05 Ubiquitin receptor RAD231.2e-4784.62Show/hide
Query:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA
        +R QL   VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS SAGQSS QPAQ PPVAQP+L+STPA QVTPSP 
Subjt:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA

Query:  PA----HQAPTQAPSSAPKNTTSTSDRATD
        PA     QAPTQAPSSAPKNTTSTS+R TD
Subjt:  PA----HQAPTQAPSSAPKNTTSTSDRATD

A0A1S3CI18 Ubiquitin receptor RAD235.0e-4987.3Show/hide
Query:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA
        +R QL   VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS+SAGQSS QPAQ PPVAQP+L+STPA QVTPSP 
Subjt:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA

Query:  PAHQAPTQAPSSAPKNTTSTSDRATD
        PA QAPTQAPSSA KNTTSTSDR TD
Subjt:  PAHQAPTQAPSSAPKNTTSTSDRATD

A0A1S3CIK2 Ubiquitin receptor RAD233.6e-4790.6Show/hide
Query:  MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQA
        MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS+SAGQSS QPAQ PPVAQP+L+STPA QVTPSP PA QAPTQA
Subjt:  MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQA

Query:  PSSAPKNTTSTSDRATD
        PSSA KNTTSTSDR TD
Subjt:  PSSAPKNTTSTSDRATD

A0A5A7SUP1 Ubiquitin receptor RAD233.6e-4790.6Show/hide
Query:  MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQA
        MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS+SAGQSS QPAQ PPVAQP+L+STPA QVTPSP PA QAPTQA
Subjt:  MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQA

Query:  PSSAPKNTTSTSDRATD
        PSSA KNTTSTSDR TD
Subjt:  PSSAPKNTTSTSDRATD

A0A6J1DGY9 Ubiquitin receptor RAD232.5e-4884.92Show/hide
Query:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA
        +R Q    VMAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDESTLAENKVSE+GFLVVMLSKSKTS S GQSS QPAQ PPVAQP+LNSTP TQVTPSP 
Subjt:  LRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPA

Query:  PAHQAPTQAPSSAPKNTTSTSDRATD
        PA QAPTQAPSSAP+NTTSTSDR  D
Subjt:  PAHQAPTQAPSSAPKNTTSTSDRATD

SwissProt top hitse value%identityAlignment
Q40742 Probable ubiquitin receptor RAD235.6e-1346.15Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQ
        V  VK+ IE  QG+  YP  QQ+LIH GKVLKD++TL ENKV E+ FLV+ML + K SS    SSA    K P      N  P TQ  P+ APA QAP  
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQ

Query:  APSSAPKNTTSTSDRAT
          ++ P   ++ +  AT
Subjt:  APSSAPKNTTSTSDRAT

Q4KMA2 UV excision repair protein RAD23 homolog B3.1e-1138.02Show/hide
Query:  KVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAP
        + V A+K+ IE  +GKD +P   Q LI+ GK+L D++ L E K+ E  F+VVM++K K  +SA  ++ Q +  P  +   ++S+PA  V  +PAP    P
Subjt:  KVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAP

Query:  TQAPSSAPKNTTSTSDRATDK
          AP+S P +TT  S  A+ +
Subjt:  TQAPSSAPKNTTSTSDRATDK

Q84L31 Ubiquitin receptor RAD23c9.2e-1645.95Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPS--PAPAHQAP
        V+ VKKNIE VQG D YP  +Q+LIH GKVLKDE+T+ ENKV+E+ F+V+M++KSK +S+A  S++    +     P  +    +  TP+   AP   AP
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVTPS--PAPAHQAP

Query:  TQAPSSAPKNT
        T+ P  AP  T
Subjt:  TQAPSSAPKNT

Q84L32 Probable ubiquitin receptor RAD23a7.1e-2451.47Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQ--KPPVAQPILNSTPATQVTPSPAPAHQAP
        +MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDE+TL ENKV+E+GFLVVMLSKSKT+SSAG SS QP       ++   L +   TQ    PA ++  P
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQ--KPPVAQPILNSTPATQVTPSPAPAHQAP

Query:  TQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG
         Q   +A  +T   +       ++ E +V  ++  G
Subjt:  TQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG

Q84L33 Ubiquitin receptor RAD23b3.7e-2550.71Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQ------VTPSPAPA
        +MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L ENKV+E+GFLVVMLSKSK+  SAGQ+S Q +    V+QP+  +T +T+         SP PA
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQ------VTPSPAPA

Query:  HQAPTQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG
           P Q   +A  +T   +       ++ E +V  ++  G
Subjt:  HQAPTQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG

Arabidopsis top hitse value%identityAlignment
AT1G16190.1 Rad23 UV excision repair protein family5.0e-2551.47Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQ--KPPVAQPILNSTPATQVTPSPAPAHQAP
        +MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDE+TL ENKV+E+GFLVVMLSKSKT+SSAG SS QP       ++   L +   TQ    PA ++  P
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQ--KPPVAQPILNSTPATQVTPSPAPAHQAP

Query:  TQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG
         Q   +A  +T   +       ++ E +V  ++  G
Subjt:  TQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG

AT1G79650.1 Rad23 UV excision repair protein family2.7e-2650.71Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQ------VTPSPAPA
        +MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L ENKV+E+GFLVVMLSKSK+  SAGQ+S Q +    V+QP+  +T +T+         SP PA
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQ------VTPSPAPA

Query:  HQAPTQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG
           P Q   +A  +T   +       ++ E +V  ++  G
Subjt:  HQAPTQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG

AT1G79650.2 Rad23 UV excision repair protein family5.9e-2652.21Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVT--PSPAPAHQAP
        +MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L ENKV+E+GFLVVMLSKSK+  SAGQ+S Q     PV+    ++ PA   T   SP PA   P
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQVT--PSPAPAHQAP

Query:  TQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG
         Q   +A  +T   +       ++ E +V  ++  G
Subjt:  TQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG

AT1G79650.3 Rad23 UV excision repair protein family2.7e-2650.71Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQ------VTPSPAPA
        +MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L ENKV+E+GFLVVMLSKSK+  SAGQ+S Q +    V+QP+  +T +T+         SP PA
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQ------VTPSPAPA

Query:  HQAPTQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG
           P Q   +A  +T   +       ++ E +V  ++  G
Subjt:  HQAPTQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTG

AT1G79650.4 Rad23 UV excision repair protein family1.6e-2662.26Show/hide
Query:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQ------VTPSPAPA
        +MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDE++L ENKV+E+GFLVVMLSKSK+  SAGQ+S Q +    V+QP+  +T +T+         SP PA
Subjt:  VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTSSSAGQSSAQPAQKPPVAQPILNSTPATQ------VTPSPAPA

Query:  HQAPTQ
           P Q
Subjt:  HQAPTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCAGTTATTAGGAGGCTCTCTGTTCTCATCTGCTCCTGGTGCTTTTCATCCATCCAAAACAGTTATTCAGGCAATATTGCAGAGTGAGAGAGAGATAGAAACAAC
CAATGGTATAGGGACTAGAGGTCTACGGGGTCAGTTGAACAAGGTTGTGATGGCTGTCAAGAAAAATATTGAAGATGTACAAGGAAAGGATAATTATCCTTGTGGTCAGC
AATTACTAATACACAATGGGAAAGTTCTGAAAGATGAAAGTACTCTGGCAGAAAACAAAGTATCTGAAGATGGTTTTCTTGTTGTCATGCTCAGCAAGAGCAAAACATCA
AGCTCAGCAGGGCAGTCGTCAGCTCAGCCTGCTCAAAAGCCCCCTGTAGCTCAACCAATTTTGAATTCGACTCCTGCTACCCAAGTTACACCATCACCGGCTCCTGCACA
TCAAGCTCCCACACAAGCACCATCATCTGCCCCTAAGAACACTACATCTACTTCAGACAGGGCGACAGATAAGTTTACAAATGAAGAAAATATTGTTGGTATGGTTTTAG
TGACGGGCATTGCCCGTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCAGTTATTAGGAGGCTCTCTGTTCTCATCTGCTCCTGGTGCTTTTCATCCATCCAAAACAGTTATTCAGGCAATATTGCAGAGTGAGAGAGAGATAGAAACAAC
CAATGGTATAGGGACTAGAGGTCTACGGGGTCAGTTGAACAAGGTTGTGATGGCTGTCAAGAAAAATATTGAAGATGTACAAGGAAAGGATAATTATCCTTGTGGTCAGC
AATTACTAATACACAATGGGAAAGTTCTGAAAGATGAAAGTACTCTGGCAGAAAACAAAGTATCTGAAGATGGTTTTCTTGTTGTCATGCTCAGCAAGAGCAAAACATCA
AGCTCAGCAGGGCAGTCGTCAGCTCAGCCTGCTCAAAAGCCCCCTGTAGCTCAACCAATTTTGAATTCGACTCCTGCTACCCAAGTTACACCATCACCGGCTCCTGCACA
TCAAGCTCCCACACAAGCACCATCATCTGCCCCTAAGAACACTACATCTACTTCAGACAGGGCGACAGATAAGTTTACAAATGAAGAAAATATTGTTGGTATGGTTTTAG
TGACGGGCATTGCCCGTCGTTAA
Protein sequenceShow/hide protein sequence
MAQLLGGSLFSSAPGAFHPSKTVIQAILQSEREIETTNGIGTRGLRGQLNKVVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEDGFLVVMLSKSKTS
SSAGQSSAQPAQKPPVAQPILNSTPATQVTPSPAPAHQAPTQAPSSAPKNTTSTSDRATDKFTNEENIVGMVLVTGIARR