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Spg004169 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004169
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit E-like
Genome locationscaffold6:7147281..7149555
RNA-Seq ExpressionSpg004169
SyntenySpg004169
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013955 - Replication factor A, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8518195.1 hypothetical protein F0562_015669 [Nyssa sinensis]9.6e-0527.73Show/hide
Query:  KREVLLMDNKFNTMKLTLWDDLAENEGQYLEEN-GQAQSVVITNVKPTEFDDYMPTA--------YCTKCENENSTFTRKYVLRMLVSDGEEESYITLF-
        KRE+ +M+ + +++ +TLW D+A NEGQ L+EN  + Q +V++N+  T +      +        +   CE +     + Y +R+ V DG ++  + LF 
Subjt:  KREVLLMDNKFNTMKLTLWDDLAENEGQYLEEN-GQAQSVVITNVKPTEFDDYMPTA--------YCTKCENENSTFTRKYVLRMLVSDGEEESYITLF-

Query:  YAADYIVGCNATEYYNDLK
             ++GC  ++Y N ++
Subjt:  YAADYIVGCNATEYYNDLK

OIT08014.1 hypothetical protein A4A49_30234 [Nicotiana attenuata]1.6e-0425.17Show/hide
Query:  RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSV---------------------------------VITNVKP---------TEFDDYMPTAY
        R+RE+++ + + +   +TLW D AEN+G+ LE+    + +                                 +I   +P          + D    TA 
Subjt:  RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSV---------------------------------VITNVKP---------TEFDDYMPTAY

Query:  CTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIVGCNATEYYNDL
        C  C  EN  +  +Y LR+ VS GE    + LF AA+Y+ GC+  EY   +
Subjt:  CTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIVGCNATEYYNDL

ONK60194.1 uncharacterized protein A4U43_C08F15380 [Asparagus officinalis]9.6e-0533.64Show/hide
Query:  RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVV--ITNVKPTEFDDYMPTAYCTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIV
        ++REV++M+ +F+ + +TLW DLAE EG  LE    A+ VV  ++ V      ++         +N        Y LR+ V+DG + +Y+TLF  A+ ++
Subjt:  RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVV--ITNVKPTEFDDYMPTAYCTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIV

Query:  GCNATEY
        GC A  Y
Subjt:  GCNATEY

XP_020242959.1 replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis]3.7e-0448Show/hide
Query:  TAYCTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIVGCNATEY
        TA CT C+N NS +T +Y LR+ V+DG + +Y+TLF  A+ ++GC A  Y
Subjt:  TAYCTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIVGCNATEY

XP_022155232.1 replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]1.1e-1374.07Show/hide
Query:  FPRKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVV-ITNVKPTEFD
        + +KREVLLMDNK NT+KLTLWDDLAENEGQYLEENG+ Q+V+ ITNV+P +F+
Subjt:  FPRKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVV-ITNVKPTEFD

TrEMBL top hitse value%identityAlignment
A0A1J6IT36 Rep_fac-A_C domain-containing protein7.9e-0525.17Show/hide
Query:  RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSV---------------------------------VITNVKP---------TEFDDYMPTAY
        R+RE+++ + + +   +TLW D AEN+G+ LE+    + +                                 +I   +P          + D    TA 
Subjt:  RKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSV---------------------------------VITNVKP---------TEFDDYMPTAY

Query:  CTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIVGCNATEYYNDL
        C  C  EN  +  +Y LR+ VS GE    + LF AA+Y+ GC+  EY   +
Subjt:  CTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIVGCNATEYYNDL

A0A5J4ZI14 REPA_OB_2 domain-containing protein4.7e-0527.73Show/hide
Query:  KREVLLMDNKFNTMKLTLWDDLAENEGQYLEEN-GQAQSVVITNVKPTEFDDYMPTA--------YCTKCENENSTFTRKYVLRMLVSDGEEESYITLF-
        KRE+ +M+ + +++ +TLW D+A NEGQ L+EN  + Q +V++N+  T +      +        +   CE +     + Y +R+ V DG ++  + LF 
Subjt:  KREVLLMDNKFNTMKLTLWDDLAENEGQYLEEN-GQAQSVVITNVKPTEFDDYMPTA--------YCTKCENENSTFTRKYVLRMLVSDGEEESYITLF-

Query:  YAADYIVGCNATEYYNDLK
             ++GC  ++Y N ++
Subjt:  YAADYIVGCNATEYYNDLK

A0A6J1DNS8 replication protein A 70 kDa DNA-binding subunit E-like5.5e-1474.07Show/hide
Query:  FPRKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVV-ITNVKPTEFD
        + +KREVLLMDNK NT+KLTLWDDLAENEGQYLEENG+ Q+V+ ITNV+P +F+
Subjt:  FPRKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVV-ITNVKPTEFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCAATTTTTCCAAGAAAAAGGGAAGTTCTACTTATGGACAATAAGTTTAATACAATGAAATTGACATTATGGGACGATTTAGCTGAAAATGAAGGACAATATCT
GGAGGAAAATGGGCAAGCACAAAGTGTAGTAATCACCAATGTAAAGCCTACTGAATTTGATGACTACATGCCAACTGCATATTGTACAAAATGTGAGAATGAAAATTCTA
CATTTACAAGAAAATATGTGTTGAGAATGCTTGTATCTGATGGTGAAGAGGAAAGCTACATAACTCTTTTTTATGCTGCTGATTACATAGTTGGATGCAATGCAACCGAA
TATTACAATGATCTCAAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGCAATTTTTCCAAGAAAAAGGGAAGTTCTACTTATGGACAATAAGTTTAATACAATGAAATTGACATTATGGGACGATTTAGCTGAAAATGAAGGACAATATCT
GGAGGAAAATGGGCAAGCACAAAGTGTAGTAATCACCAATGTAAAGCCTACTGAATTTGATGACTACATGCCAACTGCATATTGTACAAAATGTGAGAATGAAAATTCTA
CATTTACAAGAAAATATGTGTTGAGAATGCTTGTATCTGATGGTGAAGAGGAAAGCTACATAACTCTTTTTTATGCTGCTGATTACATAGTTGGATGCAATGCAACCGAA
TATTACAATGATCTCAAG
Protein sequenceShow/hide protein sequence
MMAIFPRKREVLLMDNKFNTMKLTLWDDLAENEGQYLEENGQAQSVVITNVKPTEFDDYMPTAYCTKCENENSTFTRKYVLRMLVSDGEEESYITLFYAADYIVGCNATE
YYNDLK