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Spg004231 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004231
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein PAT1 homolog 1-like
Genome locationscaffold6:7010933..7015054
RNA-Seq ExpressionSpg004231
SyntenySpg004231
Gene Ontology termsGO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA (biological process)
GO:0006012 - galactose metabolic process (biological process)
GO:0003978 - UDP-glucose 4-epimerase activity (molecular function)
InterPro domainsIPR039900 - Pat1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577085.1 Serine hydroxymethyltransferase 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.9e-2957.86Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQPDAKDLRDSAENSS                                                       +N+LFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDL STFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

KAG7015094.1 Protein PAT1-like 2 [Cucurbita argyrosperma subsp. argyrosperma]6.9e-2957.86Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQPDAKDLRDSAENSS                                                       +N+LFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDL STFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

XP_022984284.1 uncharacterized protein LOC111482634 [Cucurbita maxima]6.9e-2957.86Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQPDAKDLRDSAENSS                                                       +N+LFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDL STFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

XP_023521540.1 uncharacterized protein LOC111785359 [Cucurbita pepo subsp. pepo]6.9e-2957.86Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQPDAKDLRDSAENSS                                                       +N+LFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDL STFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

XP_023552869.1 uncharacterized protein LOC111810394 [Cucurbita pepo subsp. pepo]6.9e-2957.86Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQPDAKDLRDSAENSS                                                       +N+LFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDL STFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

TrEMBL top hitse value%identityAlignment
A0A1S3BSF1 uncharacterized protein LOC1034930114.9e-2857.14Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQ D  DLRDSAENSS                                                       +NSLFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDLASTFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

A0A5A7V6P5 Protein PAT1-like protein 1 isoform X24.9e-2857.14Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQ D  DLRDSAENSS                                                       +NSLFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDLASTFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

A0A5D3CXZ2 Protein PAT1-like protein 1 isoform X24.9e-2857.14Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQ D  DLRDSAENSS                                                       +NSLFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDLASTFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

A0A6J1ET77 uncharacterized protein LOC1114375112.2e-2857.14Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQPDAKDLRDSA NSS                                                       +N+LFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDL STFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

A0A6J1JA19 uncharacterized protein LOC1114826343.4e-2957.86Show/hide
Query:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE
        MEQPDAKDLRDSAENSS                                                       +N+LFDASRYEFFGQNVVGEVELGGLEE
Subjt:  MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEE

Query:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        DEDVPLFGSTDEEYRLFVREE AGLGSLSEMDDL STFAK
Subjt:  DEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

SwissProt top hitse value%identityAlignment
F4J077 Protein PAT1 homolog 15.9e-1561.43Show/hide
Query:  SNSLFDASRYEFFGQNVVGEVELGGLEEDEDV-PLFG-STDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        +++LFDAS+YEFFGQN + ++ELGGL++D  + P+ G + D+EY LF + EGAGLGSLS+MDDLA+TFAK
Subjt:  SNSLFDASRYEFFGQNVVGEVELGGLEEDEDV-PLFG-STDEEYRLFVREEGAGLGSLSEMDDLASTFAK

Q0WPK4 Protein PAT1 homolog1.5e-1052.24Show/hide
Query:  NSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        N++FDAS+Y FFG +VV EVELGGLEE++++  F    E++  F +EE      LS++DDLASTF+K
Subjt:  NSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

Q94C98 Protein PAT1 homolog 27.7e-1562.5Show/hide
Query:  SNSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAKRKSN
        +++LFDAS+YEFFGQ+ + EVELGGL++D  V      DEEY LF + EGAGLGSLS+MDDLA+TFAK   N
Subjt:  SNSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAKRKSN

Arabidopsis top hitse value%identityAlignment
AT1G79090.1 FUNCTIONS IN: molecular_function unknown1.1e-1152.24Show/hide
Query:  NSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        N++FDAS+Y FFG +VV EVELGGLEE++++  F    E++  F +EE      LS++DDLASTF+K
Subjt:  NSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

AT1G79090.2 FUNCTIONS IN: molecular_function unknown1.1e-1152.24Show/hide
Query:  NSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        N++FDAS+Y FFG +VV EVELGGLEE++++  F    E++  F +EE      LS++DDLASTF+K
Subjt:  NSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAK

AT3G22270.1 Topoisomerase II-associated protein PAT14.2e-1661.43Show/hide
Query:  SNSLFDASRYEFFGQNVVGEVELGGLEEDEDV-PLFG-STDEEYRLFVREEGAGLGSLSEMDDLASTFAK
        +++LFDAS+YEFFGQN + ++ELGGL++D  + P+ G + D+EY LF + EGAGLGSLS+MDDLA+TFAK
Subjt:  SNSLFDASRYEFFGQNVVGEVELGGLEEDEDV-PLFG-STDEEYRLFVREEGAGLGSLSEMDDLASTFAK

AT4G14990.1 Topoisomerase II-associated protein PAT15.5e-1662.5Show/hide
Query:  SNSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAKRKSN
        +++LFDAS+YEFFGQ+ + EVELGGL++D  V      DEEY LF + EGAGLGSLS+MDDLA+TFAK   N
Subjt:  SNSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGSTDEEYRLFVREEGAGLGSLSEMDDLASTFAKRKSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAACCTGATGCCAAGGATTTGAGGGACTCTGCGGAGAATTCCTCTGGTGAGCTCACTGTTTCTGCTTCGAGATTTGTCGTGGTGTTTCTGTTTTGTCCGTGGAT
TTCTGGAATTGTTTTGTTGCTTTTTTTGATTATGTTTTGCTTTTGTATCTATCTGATGCCTTTGTTGAAGGTTTGCTTCGTGCTGGAGCTGTTCTTTCAATTGTGCTCTA
ATTCGCTCTTTGATGCTTCACGATATGAGTTTTTTGGTCAAAATGTCGTGGGAGAAGTGGAGCTGGGAGGTTTAGAAGAAGATGAAGATGTTCCTTTATTTGGATCTACA
GATGAAGAGTATCGTTTGTTTGTTCGGGAAGAGGGTGCAGGGTTGGGATCTTTATCAGAAATGGATGATTTGGCAAGTACTTTTGCAAAGAGAAAAAGTAACGCATATTA
TGCAGCAGTTCTCTTTTCCAAAATTAATGATGCAACAGCCGTGATTTCAATTTTGTTTATTACTGACTTTGCTGAAAGATTTATACCAACTACCATTGTGATAGCAGTTG
CTTTGGTTACAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACAACCTGATGCCAAGGATTTGAGGGACTCTGCGGAGAATTCCTCTGGTGAGCTCACTGTTTCTGCTTCGAGATTTGTCGTGGTGTTTCTGTTTTGTCCGTGGAT
TTCTGGAATTGTTTTGTTGCTTTTTTTGATTATGTTTTGCTTTTGTATCTATCTGATGCCTTTGTTGAAGGTTTGCTTCGTGCTGGAGCTGTTCTTTCAATTGTGCTCTA
ATTCGCTCTTTGATGCTTCACGATATGAGTTTTTTGGTCAAAATGTCGTGGGAGAAGTGGAGCTGGGAGGTTTAGAAGAAGATGAAGATGTTCCTTTATTTGGATCTACA
GATGAAGAGTATCGTTTGTTTGTTCGGGAAGAGGGTGCAGGGTTGGGATCTTTATCAGAAATGGATGATTTGGCAAGTACTTTTGCAAAGAGAAAAAGTAACGCATATTA
TGCAGCAGTTCTCTTTTCCAAAATTAATGATGCAACAGCCGTGATTTCAATTTTGTTTATTACTGACTTTGCTGAAAGATTTATACCAACTACCATTGTGATAGCAGTTG
CTTTGGTTACAGGATAG
Protein sequenceShow/hide protein sequence
MEQPDAKDLRDSAENSSGELTVSASRFVVVFLFCPWISGIVLLLFLIMFCFCIYLMPLLKVCFVLELFFQLCSNSLFDASRYEFFGQNVVGEVELGGLEEDEDVPLFGST
DEEYRLFVREEGAGLGSLSEMDDLASTFAKRKSNAYYAAVLFSKINDATAVISILFITDFAERFIPTTIVIAVALVTG