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Spg004262 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004262
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationscaffold6:5914235..5916301
RNA-Seq ExpressionSpg004262
SyntenySpg004262
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1222011.1 hypothetical protein CJ030_MR2G018503 [Morella rubra]8.4e-4086.46Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTIT        +LTEPIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

PON57115.1 Transcription elongation factor [Trema orientale]8.4e-4086.46Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+T        +LTEPIDIYSEWIDECERVNNLE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

XP_010090451.1 transcription elongation factor 1 homolog isoform X1 [Morus notabilis]2.9e-4088.54Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTIT        +LTEPIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

XP_022142747.1 transcription elongation factor 1 homolog [Momordica charantia]2.9e-4088.54Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTIT        +LTEPIDIYSEWIDECERVNNLE+D A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

XP_038896920.1 transcription elongation factor 1 homolog [Benincasa hispida]4.7e-4371.01Show/hide
Query:  MSINTGPPFNFIPHSSIRPARRLTTANDNPSQFDQRSASPQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFST
        MSIN     NFI +SSIRPA +L       +       S Q+MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQE FST
Subjt:  MSINTGPPFNFIPHSSIRPARRLTTANDNPSQFDQRSASPQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFST

Query:  TITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        TIT        +L+E ID+YSEWIDECERVNNLEDDAA
Subjt:  TITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

TrEMBL top hitse value%identityAlignment
A0A2P5C7Z2 Transcription elongation factor 1 homolog4.1e-4086.46Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+T        +LTEPIDIYSEWIDECERVNNLE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

A0A2P5DXC0 Transcription elongation factor 1 homolog4.1e-4086.46Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+T        +LTEPIDIYSEWIDECERVNNLE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

A0A6A1W9X5 Transcription elongation factor 1 homolog4.1e-4086.46Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTIT        +LTEPIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

A0A6J1CNR1 Transcription elongation factor 1 homolog1.4e-4088.54Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTIT        +LTEPIDIYSEWIDECERVNNLE+D A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

W9R774 Transcription elongation factor 1 homolog1.4e-4088.54Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTIT        +LTEPIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDDAA

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog4.2e-1848.89Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT         L+EP+D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVN

P36053 Transcription elongation factor 11.9e-1847.78Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNN
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC + F T I         SL++P+D+YS+W D  E VN+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNN

P60002 Transcription elongation factor 1 homolog4.2e-1848.89Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT         L+EP+D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog1.7e-3576.6Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTIT        +LTE IDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD

Q8LHP0 Transcription elongation factor 1 homolog2.3e-4084.04Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE FSTT+         +LTEPIDIYSEWIDECERVNN+EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein1.2e-3676.6Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTIT        +LTE IDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSYESLTEPIDIYSEWIDECERVNNLEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATAAATACCGGCCCTCCCTTCAATTTCATTCCTCATTCTTCAATTCGGCCAGCGAGACGATTAACAACAGCGAACGATAATCCCTCCCAATTTGATCAGCGATC
AGCCTCACCACAAGAAATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTGTTTAGCTGCCCCTTCTGCAATCATGGGA
CCAGTGTGGAATGCCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGGTGTTCTCTTCAAATCCTAC
GAGTCCTTGACTGAGCCAATCGACATATATAGTGAATGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTATAAATACCGGCCCTCCCTTCAATTTCATTCCTCATTCTTCAATTCGGCCAGCGAGACGATTAACAACAGCGAACGATAATCCCTCCCAATTTGATCAGCGATC
AGCCTCACCACAAGAAATGGGGAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTGTTTAGCTGCCCCTTCTGCAATCATGGGA
CCAGTGTGGAATGCCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGGTGTTCTCTTCAAATCCTAC
GAGTCCTTGACTGAGCCAATCGACATATATAGTGAATGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG
Protein sequenceShow/hide protein sequence
MSINTGPPFNFIPHSSIRPARRLTTANDNPSQFDQRSASPQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITGVLFKSY
ESLTEPIDIYSEWIDECERVNNLEDDAA