; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004282 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004282
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L27
Genome locationscaffold6:7026390..7026966
RNA-Seq ExpressionSpg004282
SyntenySpg004282
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR001141 - Ribosomal protein L27e
IPR008991 - Translation protein SH3-like domain superfamily
IPR038655 - Ribosomal protein L27e superfamily
IPR041991 - Eukaryotic Ribosomal Protein L27, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147740.1 60S ribosomal protein L27 [Cucumis sativus]2.0e-6397.74Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+KKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

XP_022931548.1 60S ribosomal protein L27-2-like [Cucurbita moschata]2.4e-6498.5Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

XP_022931553.1 60S ribosomal protein L27-2-like [Cucurbita moschata]3.1e-6497.74Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

XP_022942297.1 60S ribosomal protein L27-2 [Cucurbita moschata]6.9e-6497.74Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

XP_022985069.1 60S ribosomal protein L27-2-like [Cucurbita maxima]5.3e-6496.99Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVT+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

TrEMBL top hitse value%identityAlignment
A0A6J1EZ01 60S ribosomal protein L271.1e-6498.5Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

A0A6J1EZ07 60S ribosomal protein L271.5e-6497.74Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

A0A6J1FPU8 60S ribosomal protein L273.3e-6497.74Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

A0A6J1JA75 60S ribosomal protein L271.1e-6498.5Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

A0A6J1JC92 60S ribosomal protein L272.6e-6496.99Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVT+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L272.4e-5177.37Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT
        M KFLK NKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDS+KK  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV 
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT

Query:  VDCLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
         D LQ++DKKVT A+ TK R  ERFKTGKNRWFFTKL
Subjt:  VDCLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

P51419 60S ribosomal protein L27-32.6e-5884.21Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKV A KE K + EERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

Q05462 60S ribosomal protein L277.7e-5883.46Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLK NKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDS+KKTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKVTA KETKK  EERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

Q8LCL3 60S ribosomal protein L27-22.6e-5884.21Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        +SKDKKVTA KE K + EERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

Q9SKX8 60S ribosomal protein L27-11.3e-5274.44Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D +
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
         SKDKKVTA KE K +FEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family9.0e-5474.44Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D +
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
         SKDKKVTA KE K +FEERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

AT3G22230.1 Ribosomal L27e protein family1.9e-5984.21Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        +SKDKKVTA KE K + EERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

AT4G15000.1 Ribosomal L27e protein family1.9e-5984.21Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL
        QSKDKKV A KE K + EERFKTGKNRWFFTKL
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKL

AT4G15000.2 Ribosomal L27e protein family7.6e-5382.93Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCL

Query:  QSKDKKVTAAKETKKRFEERFKT
        QSKDKKV A KE K + EERFKT
Subjt:  QSKDKKVTAAKETKKRFEERFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGGGC
TTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCAGCCAAGGTCATCCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAATCCAGAGTCAAGGCCTTCATCAAGC
TCGTCAATTACAGGCATCTAATGCCCACCAGGTACACTCTCGATGTGGATCTCAAGGACGTCGTCACCGTCGATTGCTTGCAGTCAAAGGACAAGAAGGTTACGGCCGCT
AAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGTCGTTTGGATGAGAAATTTTCTGGGTTTGTAATGCTACA
TTTGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGACGGAACTCGGGATCGGGC
TTATGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCAGCCAAGGTCATCCGCAAGGACTCTTCTAAGAAGACTGCTAAGAAATCCAGAGTCAAGGCCTTCATCAAGC
TCGTCAATTACAGGCATCTAATGCCCACCAGGTACACTCTCGATGTGGATCTCAAGGACGTCGTCACCGTCGATTGCTTGCAGTCAAAGGACAAGAAGGTTACGGCCGCT
AAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTCAAGACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGTCGTTTGGATGAGAAATTTTCTGGGTTTGTAATGCTACA
TTTGCCTTAG
Protein sequenceShow/hide protein sequence
MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDCLQSKDKKVTAA
KETKKRFEERFKTGKNRWFFTKLSRLDEKFSGFVMLHLP