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Spg004306 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004306
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:18637693..18647460
RNA-Seq ExpressionSpg004306
SyntenySpg004306
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051940.1 hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]1.1e-1182.69Show/hide
Query:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV
        PL TLSVLRDNDAVVEIEL VPDTLPTSAESS S+SSYF N+V+SG HLV V
Subjt:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-1180.39Show/hide
Query:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY
        PL T SVL DNDAVVEIELSVPDTLPTSAES  S+SSYF N+VMSG HLV+
Subjt:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.5e-1182Show/hide
Query:  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY
        L TLSVLRDNDAVVEIEL VPDTLPTS ESS S+SSYF N+VMSG HLV+
Subjt:  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY

TYK12219.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-1182.69Show/hide
Query:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV
        PL TLSVLRDNDAVVEIEL VPDTLPTSAESS S+SSYF N+V+SG HLV V
Subjt:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]3.3e-1182.35Show/hide
Query:  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV
        L TLSVLRDNDAVVEIEL VPD LPTSAESS S+SSYF N+VMSG +LVYV
Subjt:  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV

TrEMBL top hitse value%identityAlignment
A0A5A7U9T8 Uncharacterized protein5.5e-1282.69Show/hide
Query:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV
        PL TLSVLRDNDAVVEIEL VPDTLPTSAESS S+SSYF N+V+SG HLV V
Subjt:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.6e-1180.39Show/hide
Query:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY
        PL T SVL DNDAVVEIELSVPDTLPTSAES  S+SSYF N+VMSG HLV+
Subjt:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.2e-1182Show/hide
Query:  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY
        L TLSVLRDNDAVVEIEL VPDTLPTS ESS S+SSYF N+VMSG HLV+
Subjt:  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVY

A0A5D3CPH9 Ty3-gypsy retrotransposon protein5.5e-1282.69Show/hide
Query:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV
        PL TLSVLRDNDAVVEIEL VPDTLPTSAESS S+SSYF N+V+SG HLV V
Subjt:  PLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV

A0A5D3DE96 Uncharacterized protein1.6e-1182.35Show/hide
Query:  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV
        L TLSVLRDNDAVVEIEL VPD LPTSAESS S+SSYF N+VMSG +LVYV
Subjt:  LLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAAAGGATATCAAGGGGAACCTAATGGACCTACAGATCATGGGCTCCAACGATCCGAGAGCACAGGATTTTCGAGCAAAGTAGGAGGATCTCTGGTTTCTCTGGT
TTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGC
TCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCAGCACCTCGTGTATGTTGAAAGGTTT
TCAGGGATTCCGCTGTGTTGTGTTCCACGTAGAATATCTTATATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAAAGGATATCAAGGGGAACCTAATGGACCTACAGATCATGGGCTCCAACGATCCGAGAGCACAGGATTTTCGAGCAAAGTAGGAGGATCTCTGGTTTCTCTGGT
TTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGC
TCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCAGCACCTCGTGTATGTTGAAAGGTTT
TCAGGGATTCCGCTGTGTTGTGTTCCACGTAGAATATCTTATATCTAA
Protein sequenceShow/hide protein sequence
MSKGYQGEPNGPTDHGLQRSESTGFSSKVGGSLVSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELSVPDTLPTSAESSRSSSSYFPNRVMSGQHLVYVERF
SGIPLCCVPRRISYI