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Spg004316 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004316
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L38
Genome locationscaffold5:17811880..17817540
RNA-Seq ExpressionSpg004316
SyntenySpg004316
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR002675 - Ribosomal protein L38e
IPR019775 - WD40 repeat, conserved site
IPR036322 - WD40-repeat-containing domain superfamily
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651744.1 hypothetical protein Csa_006027 [Cucumis sativus]1.7e-2182.86Show/hide
Query:  MVETPFCVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        M+  PF VSLVG+PKQIHEIKDFLLTA RKDAR VKIKRS+DV KFKV CSKYLYTLC+FDSEKA+KLKQ
Subjt:  MVETPFCVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

KAG5104250.1 hypothetical protein JHK82_041220 [Glycine max]9.2e-2078.26Show/hide
Query:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQLRGHNTEGYGLS
        PKQIHEIKDFLLTA RKDAR VKIKRS+DV KFKV CSKYLYTLC+FDSEKA+KLKQ    +T GY +S
Subjt:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQLRGHNTEGYGLS

KAG6481448.1 hypothetical protein ZIOFF_058050 [Zingiber officinale]2.1e-1983.87Show/hide
Query:  SLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        + + KPKQIHEIKDFLLTA RKDAR VKIKRS+DV KFKV CSKYLYTLC+FDSEKANKLKQ
Subjt:  SLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

XP_021645596.1 agamous-like MADS-box protein AGL103 isoform X1 [Hevea brasiliensis]1.6e-1987.93Show/hide
Query:  KPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        +PKQIHEIKDFLLTA RKDAR VKIKRS+DV KFKVCCSKYLYTLC+FDSEKA+KLKQ
Subjt:  KPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

XP_021645597.1 60S ribosomal protein L38-like isoform X2 [Hevea brasiliensis]2.1e-1989.47Show/hide
Query:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        PKQIHEIKDFLLTA RKDAR VKIKRS+DV KFKVCCSKYLYTLC+FDSEKA+KLKQ
Subjt:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

TrEMBL top hitse value%identityAlignment
A0A0L9VFB2 Uncharacterized protein2.2e-1982.81Show/hide
Query:  CVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        CV L  +PKQIHEIKDFLLTA RKDAR VKIKRSRDV KFKV CSKYLYTLC+FD EKA+KLKQ
Subjt:  CVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

A0A0R0H271 Uncharacterized protein2.2e-1982.81Show/hide
Query:  CVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        CV L  +PKQIHEIKDFLLTA RKDAR VKIKRSRDV KFKV CSKYLYTLC+FD EKA+KLKQ
Subjt:  CVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

A0A0S3S3B3 Uncharacterized protein2.2e-1982.81Show/hide
Query:  CVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        CV L  +PKQIHEIKDFLLTA RKDAR VKIKRSRDV KFKV CSKYLYTLC+FD EKA+KLKQ
Subjt:  CVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

A0A445GR17 60S ribosomal protein L381.7e-1982.81Show/hide
Query:  CVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        CV L  +PKQIHEIKDFLLTA RKDAR VKIKRSRDV KFKV CSKYLYTLC+FD EKA+KLKQ
Subjt:  CVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

A0A6A1VKI7 60S ribosomal protein L382.2e-1980Show/hide
Query:  FCVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        FC+    +PKQIHEIKDFLLTA RKDAR VKIKRS+DV KFKV CSKYLYTLC+FDSEKA+KLKQ
Subjt:  FCVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

SwissProt top hitse value%identityAlignment
O22466 WD-40 repeat-containing protein MSI17.3e-2082.69Show/hide
Query:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK
        +LRGH+TEGYGLSWS+FK+GHLL GSDD+ ICLWDINATP NK LEAMQIFK
Subjt:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK

O22467 Histone-binding protein MSI17.3e-2082.69Show/hide
Query:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK
        +LRGH++EGYGLSWSKFK+GHLL GSDDAQICLWDINATP NK L+A QIFK
Subjt:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK

O22860 60S ribosomal protein L385.6e-2082.46Show/hide
Query:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        PKQIHEIKDFLLTA RKDAR VKIKRS+D+ KFKV CS+YLYTLC+FD EKA+KLKQ
Subjt:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

P46291 60S ribosomal protein L383.1e-1878.95Show/hide
Query:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        PKQIHEIKDFLLTA RKDAR VKIK+++D+ KFKV CSKYLYTLC+ D EKA+KLKQ
Subjt:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

Q10G81 Histone-binding protein MSI1 homolog6.9e-1875.47Show/hide
Query:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFKF
        +L+GHN+EGYGLSWS FKEGHLL GSDDAQICLWDI A   NK L+A+QIFK+
Subjt:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFKF

Arabidopsis top hitse value%identityAlignment
AT2G16780.1 Transducin family protein / WD-40 repeat family protein1.6e-1461.54Show/hide
Query:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK
        +L GH+ EGYGLSWS FKEG+LL GS D +ICLWD++ATP +K L AM +++
Subjt:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK

AT2G43460.1 Ribosomal L38e protein family4.0e-2182.46Show/hide
Query:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        PKQIHEIKDFLLTA RKDAR VKIKRS+D+ KFKV CS+YLYTLC+FD EKA+KLKQ
Subjt:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

AT3G59540.1 Ribosomal L38e protein family4.0e-2182.46Show/hide
Query:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ
        PKQIHEIKDFLLTA RKDAR VKIKRS+D+ KFKV CS+YLYTLC+FD EKA+KLKQ
Subjt:  PKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQ

AT4G35050.1 Transducin family protein / WD-40 repeat family protein4.0e-1355.77Show/hide
Query:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK
        +L GH  EGYGL+WS FKEG+LL GS D +ICLWD++AT  +K L  M +++
Subjt:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK

AT5G58230.1 Transducin/WD40 repeat-like superfamily protein5.2e-2182.69Show/hide
Query:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK
        +LRGH++EGYGLSWSKFK+GHLL GSDDAQICLWDINATP NK L+A QIFK
Subjt:  QLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPMNKFLEAMQIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAACTCCCTTTTGTGTATCTCTTGTTGGAAAACCGAAGCAAATCCATGAGATTAAAGATTTTCTTCTCACTGCAGGAAGAAAGGATGCCCGTTATGTCAAAAT
TAAGAGGAGCAGAGATGTAGCCAAGTTTAAGGTTTGCTGCTCTAAGTACCTTTACACGCTTTGCTTGTTCGACTCTGAGAAGGCTAACAAATTGAAGCAGTTGAGGGGTC
ACAATACTGAAGGTTATGGTTTATCATGGAGTAAGTTCAAGGAGGGTCATCTACTTGGTGGCTCTGATGATGCACAGATTTGTTTATGGGATATTAATGCTACTCCGATG
AACAAATTCCTTGAGGCTATGCAAATTTTTAAGTTCGTAGCGTTGAGACGCCGTGAGGTGGAGTCTCGACACCACCTCTCGGGTCTTCCTTGTTTGGTTGTTTCAATTCT
TGATCCTTTTGACGTTGTTTTCGAGTCCTGCATGCTCTGCTTTGGTCTTTTCACCGCCTCGACATCCCATGGACTCCAAGTGAGGAAACGGAGGTGGCTTGCTGCCCAAG
ACGCACAGCGTCGCGACGCTGTGACGTCACCCTTTCTTGCCGCTCAAGTTGGTGCTGCGTCGCGACGCTGTCGCGATTCTGGAATTTTCTTCGGAGCTTGCCAAGCGTCG
CGACACGAGGCCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAAACTCCCTTTTGTGTATCTCTTGTTGGAAAACCGAAGCAAATCCATGAGATTAAAGATTTTCTTCTCACTGCAGGAAGAAAGGATGCCCGTTATGTCAAAAT
TAAGAGGAGCAGAGATGTAGCCAAGTTTAAGGTTTGCTGCTCTAAGTACCTTTACACGCTTTGCTTGTTCGACTCTGAGAAGGCTAACAAATTGAAGCAGTTGAGGGGTC
ACAATACTGAAGGTTATGGTTTATCATGGAGTAAGTTCAAGGAGGGTCATCTACTTGGTGGCTCTGATGATGCACAGATTTGTTTATGGGATATTAATGCTACTCCGATG
AACAAATTCCTTGAGGCTATGCAAATTTTTAAGTTCGTAGCGTTGAGACGCCGTGAGGTGGAGTCTCGACACCACCTCTCGGGTCTTCCTTGTTTGGTTGTTTCAATTCT
TGATCCTTTTGACGTTGTTTTCGAGTCCTGCATGCTCTGCTTTGGTCTTTTCACCGCCTCGACATCCCATGGACTCCAAGTGAGGAAACGGAGGTGGCTTGCTGCCCAAG
ACGCACAGCGTCGCGACGCTGTGACGTCACCCTTTCTTGCCGCTCAAGTTGGTGCTGCGTCGCGACGCTGTCGCGATTCTGGAATTTTCTTCGGAGCTTGCCAAGCGTCG
CGACACGAGGCCTTCTAG
Protein sequenceShow/hide protein sequence
MVETPFCVSLVGKPKQIHEIKDFLLTAGRKDARYVKIKRSRDVAKFKVCCSKYLYTLCLFDSEKANKLKQLRGHNTEGYGLSWSKFKEGHLLGGSDDAQICLWDINATPM
NKFLEAMQIFKFVALRRREVESRHHLSGLPCLVVSILDPFDVVFESCMLCFGLFTASTSHGLQVRKRRWLAAQDAQRRDAVTSPFLAAQVGAASRRCRDSGIFFGACQAS
RHEAF