CuGenDBv2

Gene ID	Spg004354
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transcriptional adapter
Genome location	scaffold5:18582194..18591406
RNA-Seq Expression	Spg004354
Synteny	Spg004354
Gene Ontology terms	GO:0031323 - regulation of cellular metabolic process (biological process) GO:0051171 - regulation of nitrogen compound metabolic process (biological process) GO:0060255 - regulation of macromolecule metabolic process (biological process) GO:0080090 - regulation of primary metabolic process (biological process) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TYK15464.1 transcriptional adapter ADA2b isoform X1 [Cucumis melo var. makuwa]

3.4e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

XP_004139515.1 transcriptional adapter ADA2b isoform X3 [Cucumis sativus]

3.4e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

XP_031746027.1 transcriptional adapter ADA2b isoform X1 [Cucumis sativus]

3.4e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

XP_031746030.1 transcriptional adapter ADA2b isoform X5 [Cucumis sativus]

3.4e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

XP_038877795.1 transcriptional adapter ADA2b [Benincasa hispida]

3.4e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LSZ8 Transcriptional adapter

1.7e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

A0A1S3CMM5 Transcriptional adapter

1.7e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

A0A5A7TLW0 Transcriptional adapter

1.7e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

A0A5D3CWZ7 Transcriptional adapter

1.7e-09

54.05

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNWAEVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

A0A6J1IAJ4 Transcriptional adapter

4.8e-09

52.7

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG
        E   ++GI+MYGFWNW EVA                        +   DMSHVVGKNRKELLAMAKGHGEDKKG
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKG

SwissProt top hits

e value

%identity

Alignment

Q75LL6 Transcriptional adapter ADA2

8.2e-06

45.21

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Query:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKK
        E   ++GI+MYG  NWAEVA                        +   DMSHV GKNRKELLAMAK  GE KK
Subjt:  EAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKK

Q9ATB4 Transcriptional adapter ADA2b

1.6e-06

36.96

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Query:  SMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKGDKN
        ++T  L+  D +   E   ++G+++YG  NWAEVA                        +   DMSHV GKNRKEL AMAKG  +DKK ++N
Subjt:  SMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKGDKN

Arabidopsis top hits

e value

%identity

Alignment

AT4G16420.1 homolog of yeast ADA2 2B

1.2e-07

36.96

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Query:  SMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKGDKN
        ++T  L+  D +   E   ++G+++YG  NWAEVA                        +   DMSHV GKNRKEL AMAKG  +DKK ++N
Subjt:  SMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKGDKN

AT4G16420.2 homolog of yeast ADA2 2B

1.2e-07

36.96

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Query:  SMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKGDKN
        ++T  L+  D +   E   ++G+++YG  NWAEVA                        +   DMSHV GKNRKEL AMAKG  +DKK ++N
Subjt:  SMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKKGDKN

AT4G16420.3 homolog of yeast ADA2 2B

9.9e-07

37.5

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Query:  SMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKK
        ++T  L+  D +   E   ++G+++YG  NWAEVA                        +   DMSHV GKNRKEL AMAKG  +DKK
Subjt:  SMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVAS----------------------MWRRRDMSHVVGKNRKELLAMAKGHGEDKK

Sequences

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CDS sequence

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ATGAAGAATAACATACCCATATTAGATGATGCGGCCATGAGCAAAAATGAAGAGTGCAAACGAAATCTGGAAAAATGGGGCAGACTTGTTCAAGGAATTTTTGCTTTGCT
TAATTTTCGCTTCGCCTCCCTGTGGATTCGATACTCGGAATATTTCCGTTTTATATTACTTGCGGCCCGTGCACTTGCGGTTTTAGTAGCGGTGACGTGCAACAGGTTCA
TTGAGCTTAGGCAATGCAGGAGCCAATCAGTCTATTCATGTTCGCGTCGCCATTTGTTCTCCGTCGCTCGTGGGTTTCGTTCTCCACCATTCACTAGTTCCTTCGACATT
GTCCAGATCTATAGTTGTTCACTATGGTGCTTACTTCATCGACTGGTGCTAGACTTCAGTTTTCTGTCTATGACAAGTAGGTTGGTTCTGACAGATCATGCACTTTACTT
TGAAGCTGCTAGCATGCAAGGGATCAAGATGTATGGCTTCTGGAATTGGGCAGAAGTTGCTAGCATGTGGAGGCGAAGAGACATGTCTCACGTCGTTGGAAAAAATAGAA
AGGAGCTCCTTGCTATGGCTAAAGGGCATGGTGAAGACAAGAAAGGTGACAAGAATAATCTTGCTTGCTTGGAAACTAGACGCACAAAAGAGTTGTTGCTTTTAGTAAAG
CAACATGCACTTGGATGGATGAGGGTGATTGCATATGCATTGTAA

mRNA sequence

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Protein sequence

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MKNNIPILDDAAMSKNEECKRNLEKWGRLVQGIFALLNFRFASLWIRYSEYFRFILLAARALAVLVAVTCNRFIELRQCRSQSVYSCSRRHLFSVARGFRSPPFTSSFDI
VQIYSCSLWCLLHRLVLDFSFLSMTSRLVLTDHALYFEAASMQGIKMYGFWNWAEVASMWRRRDMSHVVGKNRKELLAMAKGHGEDKKGDKNNLACLETRRTKELLLLVK
QHALGWMRVIAYAL

Spg004354 (gene) of Sponge gourd (cylindrica) v1 genome