CuGenDBv2

Gene ID	Spg004374
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ATP synthase epsilon chain, chloroplastic
Genome location	scaffold86:56520..59258
RNA-Seq Expression	Spg004374
Synteny	Spg004374
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR001469 - ATP synthase, F1 complex, delta/epsilon subunit IPR020546 - ATP synthase, F1 complex, delta/epsilon subunit, N-terminal IPR020547 - ATP synthase delta/epsilon subunit, C-terminal domain IPR036771 - F0F1 ATP synthase delta/epsilon subunit, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009751744.1 CF1 subunit epsilon [Herpetospermum pedunculosum]

4.4e-63

96.32

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEV EIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNN VT+LVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

YP_009752249.1 CF1 subunit epsilon [Trichosanthes baviensis]

7.6e-63

97.06

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNN VTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRART VEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

YP_009752502.1 CF1 subunit epsilon [Trichosanthes tubiflora]

1.3e-62

96.32

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNN VTILVNDAEKASDIDPQEAQQTLE+
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRART VEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

YP_009753264.1 CF1 subunit epsilon [Nothoalsomitra suberosa]

9.0e-64

97.79

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNN VTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

YP_009913628.1 ATP synthase CF1 epsilon subunit [Luffa acutangula]

1.4e-64

99.26

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEALNGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

TrEMBL top hits

e value

%identity

Alignment

A0A6H0ERR4 ATP synthase epsilon chain, chloroplastic

4.3e-64

97.79

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNN VTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

A0A6H0ERT6 ATP synthase epsilon chain, chloroplastic

2.2e-63

96.32

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEV EIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNN VT+LVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

A0A6H0EY93 ATP synthase epsilon chain, chloroplastic

4.3e-64

97.79

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNN VTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

A0A7D4XPZ7 ATP synthase epsilon chain, chloroplastic

4.3e-64

97.79

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNN VTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

A0A7D5Y7N8 ATP synthase CF1 epsilon subunit

6.7e-65

99.26

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEALNGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

SwissProt top hits

e value

%identity

Alignment

A0ZZ41 ATP synthase epsilon chain, chloroplastic

5.8e-58

88.81

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRI+WDSEV EIIL TNSGQIGVLP+HAPIATAVDIGILRIRL  ND WLTMALMGGFARIGNN +TILVNDAEK SDIDPQEAQQ LEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV
        AEANLRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV

Q1KXV3 ATP synthase epsilon chain, chloroplastic

1.3e-57

88.06

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRI+WDSEV EIIL TNSGQIGVLP+HAPIATAVDIGILRIRL  ND WLTMALMGGFARIGNN +T+LVNDAEK+SDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV
        AEA LRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV

Q2L911 ATP synthase epsilon chain, chloroplastic

5.8e-58

88.81

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRI+WDSEV EIIL TNSGQIGVLP+HAPIATAVDIGILRIRL  ND WLTMALMGGFARIGNN +TILVNDAEK SDIDPQEAQQ LEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV
        AEANLRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV

Q49KZ2 ATP synthase epsilon chain, chloroplastic

1.3e-57

87.31

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRI+WDSEV EIIL TN+GQIGVLP+HAPIATAVDIGILRIRL  ND WLTMALMGGFARIGNN +TILVNDAEK SDIDPQEAQ+TLE+
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV
        AEANLRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV

Q4VZG9 ATP synthase epsilon chain, chloroplastic

5.5e-64

94.85

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Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNL VLTPNRIIWDSEV EIILVTNSGQIGVLPDHAPIATAVDIGIL+IRLT NDGWLTMALMGGFARIGNN VTILVNDAEKASDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN
        AEANLRKAQGKRQTIEANLALRRARTRVEA+NGVP+
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGVPN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00470.1 ATP synthase epsilon chain

6.6e-57

87.31

Show/hide

Query:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI
        MTLNLCVLTPNRI+WDSEV EIIL TNSGQIGVL +HAPIATAVDIGIL+IRL   + WLTMALMGGFARIGNN +TILVNDAEK SDIDPQEAQQTLEI
Subjt:  MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEI

Query:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV
        AEANLRKA+GKRQTIEANLALRRARTRVEALN +
Subjt:  AEANLRKAQGKRQTIEANLALRRARTRVEALNGV

Sequences

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CDS sequence

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ATGACCTTAAATCTTTGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGGCAGAAATCATTTTAGTTACGAATAGTGGACAAATTGGTGTATTACCAGATCA
CGCACCTATTGCCACAGCTGTAGATATAGGTATTTTGAGAATACGCCTTACTGCTAATGACGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATA
ATGCGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGC
AAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTCTCAATGGCGTACCTAATTTCAGCTACGAAAACAAGGTCAAAAAGAAAGA
AAATCGTAAAAGGCATAGTAGGCAGGGAAGGAAGCACCATAAGCTACAAGCTCCCCATCAACCGCCTCGGTTCGAGGTGATTCGGGAGCGGATGCGTCTCTATCTTTGGA
TTCTGAGTCGGATACTTCCTTCATATGAAGCGGATTCCCCGGTGTTTGCGTATGCGTCTGTCGATGCGTCTTCGGATTCGGCTTTAGCTGAGACTTCAGTTTCTCTAGTG
GCAGCTGCTTCTTCAGATGCCGAATCGGATTATTCTTCTTCCGATTCGGCATCTTCAAGAGTTGAAGTTGAACAGGCGCACTCACTGAAGGAAGCCTTCCGACCCGGAAG
AGGCCTATTCCGCTGGTTCGGATTGGGAAAGAGCGGGCACCGATCCTCTCTTTTAACCCTCGAAAGAGCGATTGCCGGGAATAGCAGGACAAAGACTCTCTTTTTCATAT
GTTGTGAAAACCGGACTCTGGGGTTGGAAAATGGGATTCTGGTGAAAGCGCTAGAAAGAGGAAATCAAGGATTGTCCACCATCAAGTATCAAGTTGCTGGGGAGACTGAT
TTCTGA

mRNA sequence

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Protein sequence

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MTLNLCVLTPNRIIWDSEVAEIILVTNSGQIGVLPDHAPIATAVDIGILRIRLTANDGWLTMALMGGFARIGNNAVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQG
KRQTIEANLALRRARTRVEALNGVPNFSYENKVKKKENRKRHSRQGRKHHKLQAPHQPPRFEVIRERMRLYLWILSRILPSYEADSPVFAYASVDASSDSALAETSVSLV
AAASSDAESDYSSSDSASSRVEVEQAHSLKEAFRPGRGLFRWFGLGKSGHRSSLLTLERAIAGNSRTKTLFFICCENRTLGLENGILVKALERGNQGLSTIKYQVAGETD
F

Spg004374 (gene) of Sponge gourd (cylindrica) v1 genome