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Spg004434 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004434
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold9:11597342..11600562
RNA-Seq ExpressionSpg004434
SyntenySpg004434
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149382.1 uncharacterized protein LOC111017812 [Momordica charantia]3.7e-1553.06Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFMPQHTTYNPLYDIPVGQYPFPPFEEG--QIP
        ++K EQEK ++DIEE+REK+DVI+  LEKGK VAD       + + Q   P+P  +   +R   E FM Q+TTYNPLYDI VGQYP PPF +G  QIP
Subjt:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFMPQHTTYNPLYDIPVGQYPFPPFEEG--QIP

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]4.5e-1350.5Show/hide
Query:  ELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEK--TTTHDPKSITIQVPAPFKYKSSKAVPWSKEYKVIINSE--TPPLPVDNIS
        EL+DSK L V  + HQ      VE++L  E  + S K K LTI+Y EK    +   K ITI VPAPF+YKSSKAVPW  E KV +  +  +P LPVDNI+
Subjt:  ELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEK--TTTHDPKSITIQVPAPFKYKSSKAVPWSKEYKVIINSE--TPPLPVDNIS

Query:  G
        G
Subjt:  G

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.1e-1451.96Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSF---ASHVRTTVEAFMPQHTTYNPLYDIPVGQYPFPPFEEGQIPQ
        + K EQEKT++DIEE+REK+D I+  LEKGK +A+T  P      PQ    F PSF       R   E FM Q+TTYNPLYDIP GQ+P PP   G  PQ
Subjt:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSF---ASHVRTTVEAFMPQHTTYNPLYDIPVGQYPFPPFEEGQIPQ

Query:  IP
         P
Subjt:  IP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.0e-1754.65Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFMPQHTTYNPLYDIPVGQYP
        ++K EQEKT++DIEE+REK+D I   LEKGK  AD       I  PQ   P+PP +   +R   E FMPQ+TTYNPLYD+P+GQYP
Subjt:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFMPQHTTYNPLYDIPVGQYP

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.7e-1248.51Show/hide
Query:  ELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEKTTTHD--PKSITIQVPAPFKYKSSKAVPWSKEYKVIINSE--TPPLPVDNIS
        EL+DSK L V  + HQ   I  VE++   E  + + K K LTI+Y EK    +   K ITI VPAPF+YKSSKAVPW  + KV +  +  +PPLP+DNI+
Subjt:  ELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEKTTTHD--PKSITIQVPAPFKYKSSKAVPWSKEYKVIINSE--TPPLPVDNIS

Query:  G
        G
Subjt:  G

TrEMBL top hitse value%identityAlignment
A0A6J1D7C7 Ribonuclease H2.2e-1350.5Show/hide
Query:  ELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEK--TTTHDPKSITIQVPAPFKYKSSKAVPWSKEYKVIINSE--TPPLPVDNIS
        EL+DSK L V  + HQ      VE++L  E  + S K K LTI+Y EK    +   K ITI VPAPF+YKSSKAVPW  E KV +  +  +P LPVDNI+
Subjt:  ELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEK--TTTHDPKSITIQVPAPFKYKSSKAVPWSKEYKVIINSE--TPPLPVDNIS

Query:  G
        G
Subjt:  G

A0A6J1D7T3 uncharacterized protein LOC1110178121.8e-1553.06Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFMPQHTTYNPLYDIPVGQYPFPPFEEG--QIP
        ++K EQEK ++DIEE+REK+DVI+  LEKGK VAD       + + Q   P+P  +   +R   E FM Q+TTYNPLYDI VGQYP PPF +G  QIP
Subjt:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFMPQHTTYNPLYDIPVGQYPFPPFEEG--QIP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.0e-1451.96Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSF---ASHVRTTVEAFMPQHTTYNPLYDIPVGQYPFPPFEEGQIPQ
        + K EQEKT++DIEE+REK+D I+  LEKGK +A+T  P      PQ    F PSF       R   E FM Q+TTYNPLYDIP GQ+P PP   G  PQ
Subjt:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSF---ASHVRTTVEAFMPQHTTYNPLYDIPVGQYPFPPFEEGQIPQ

Query:  IP
         P
Subjt:  IP

A0A6J1DZ90 Ribonuclease H1.5e-1754.65Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFMPQHTTYNPLYDIPVGQYP
        ++K EQEKT++DIEE+REK+D I   LEKGK  AD       I  PQ   P+PP +   +R   E FMPQ+TTYNPLYD+P+GQYP
Subjt:  EEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFMPQHTTYNPLYDIPVGQYP

A0A6J1E2J7 Ribonuclease H8.4e-1348.51Show/hide
Query:  ELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEKTTTHD--PKSITIQVPAPFKYKSSKAVPWSKEYKVIINSE--TPPLPVDNIS
        EL+DSK L V  + HQ   I  VE++   E  + + K K LTI+Y EK    +   K ITI VPAPF+YKSSKAVPW  + KV +  +  +PPLP+DNI+
Subjt:  ELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEKTTTHD--PKSITIQVPAPFKYKSSKAVPWSKEYKVIINSE--TPPLPVDNIS

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCGTGACAACGTGGGAGAATCATCTAATAGAGCAGTAGATAAGCATAACCAGATGGCGACAGAGCAGAAAGAGTTAGTGGGAAGAAATCAAACATTGAAACTAGA
AAATGAAAAATTACAGCAAGAGGTCAAACATTTGATGGACCAGGACAGGATCAAAGACCTTTCAAGAGGCAAAGAGACTCTCTTAGAGTTAGTTGCAGAATTAAACGAAA
CCATCAACAAGCAGAAAACGCAACTTATCGAGTTTGAAGAAGCCAATACTGCTCTAAGGCAAACGCTGGACAATCTACGCGTGAATATGCAGGCTCAATCAGAAGAGTCT
GAAGCTTTTAAAAAATGGGCAAGGGATCTGCGAGAGAATACATCACCTATGGCCTCTAATGCGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGGCG
TAGAACAAGGATTATGGAAGAAAAAGGTGAACAAGAGAAGACTAAGCGGGACATCGAGGAAATCAGGGAAAAGGTTGATGTAATCATTGCCACTTTAGAAAAGGGCAAAA
TGGTTGCAGATACGATTGCACCAGACACTCTGATTGGAAACCCTCAAGTTGGCCTACCATTTCCACCCAGTTTCGCTTCACATGTTCGTACGACAGTAGAAGCGTTCATG
CCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCACCATTTGAAGAAGGCCAAATCCCCCAAATCCCCATGGCTAGCCAAGCTGA
ACTGGTAGATTCAAAATTTCTTGTGGTTACCCAGACCCATCACCAGGACAATGAAATAGGCGCCGTGGAAGAATTGTTGCCTAAAGAAAATTTAAATCCATCTTTCAAAC
TGAAGCCACTCACGATCTATTACCATGAGAAGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGGCTCCTTTCAAGTACAAGAGTTCCAAGGCAGTACCA
TGGAGTAAAGAGTACAAAGTAATTATTAATTCAGAAACTCCACCACTTCCAGTTGACAACATTTCCGGAAGGGAGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTCGTGACAACGTGGGAGAATCATCTAATAGAGCAGTAGATAAGCATAACCAGATGGCGACAGAGCAGAAAGAGTTAGTGGGAAGAAATCAAACATTGAAACTAGA
AAATGAAAAATTACAGCAAGAGGTCAAACATTTGATGGACCAGGACAGGATCAAAGACCTTTCAAGAGGCAAAGAGACTCTCTTAGAGTTAGTTGCAGAATTAAACGAAA
CCATCAACAAGCAGAAAACGCAACTTATCGAGTTTGAAGAAGCCAATACTGCTCTAAGGCAAACGCTGGACAATCTACGCGTGAATATGCAGGCTCAATCAGAAGAGTCT
GAAGCTTTTAAAAAATGGGCAAGGGATCTGCGAGAGAATACATCACCTATGGCCTCTAATGCGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGGCG
TAGAACAAGGATTATGGAAGAAAAAGGTGAACAAGAGAAGACTAAGCGGGACATCGAGGAAATCAGGGAAAAGGTTGATGTAATCATTGCCACTTTAGAAAAGGGCAAAA
TGGTTGCAGATACGATTGCACCAGACACTCTGATTGGAAACCCTCAAGTTGGCCTACCATTTCCACCCAGTTTCGCTTCACATGTTCGTACGACAGTAGAAGCGTTCATG
CCACAACATACTACCTATAACCCCTTATATGACATACCTGTTGGGCAATACCCTTTTCCACCATTTGAAGAAGGCCAAATCCCCCAAATCCCCATGGCTAGCCAAGCTGA
ACTGGTAGATTCAAAATTTCTTGTGGTTACCCAGACCCATCACCAGGACAATGAAATAGGCGCCGTGGAAGAATTGTTGCCTAAAGAAAATTTAAATCCATCTTTCAAAC
TGAAGCCACTCACGATCTATTACCATGAGAAGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGGCTCCTTTCAAGTACAAGAGTTCCAAGGCAGTACCA
TGGAGTAAAGAGTACAAAGTAATTATTAATTCAGAAACTCCACCACTTCCAGTTGACAACATTTCCGGAAGGGAGGCGTAA
Protein sequenceShow/hide protein sequence
MTRDNVGESSNRAVDKHNQMATEQKELVGRNQTLKLENEKLQQEVKHLMDQDRIKDLSRGKETLLELVAELNETINKQKTQLIEFEEANTALRQTLDNLRVNMQAQSEES
EAFKKWARDLRENTSPMASNAEELFEFLGMIRRDLGRRTRIMEEKGEQEKTKRDIEEIREKVDVIIATLEKGKMVADTIAPDTLIGNPQVGLPFPPSFASHVRTTVEAFM
PQHTTYNPLYDIPVGQYPFPPFEEGQIPQIPMASQAELVDSKFLVVTQTHHQDNEIGAVEELLPKENLNPSFKLKPLTIYYHEKTTTHDPKSITIQVPAPFKYKSSKAVP
WSKEYKVIINSETPPLPVDNISGREA