; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004440 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004440
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold9:9207169..9207942
RNA-Seq ExpressionSpg004440
SyntenySpg004440
Gene Ontology termsGO:0010467 - gene expression (biological process)
GO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005840 - ribosome (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036474.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-0757.78Show/hide
Query:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWSFL
        +KR + AI+EM G  CSGFGWN+E KCI  EK++FD WV+VW+ +
Subjt:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWSFL
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-0872.5Show/hide
Query:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
        +K+QY AI+EM+G  CSGFGWNEE KCIE EK VFD WVK
Subjt:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-0773.68Show/hide
Query:  RQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
        +QY AI+EM+G  CSGFGWNEE KCIE EK VFD WVK
Subjt:  RQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.2e-0773.68Show/hide
Query:  RQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
        +QY AI+EM+G  CSGFGWNEE KCIE EK VFD WVK
Subjt:  RQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
XP_038889264.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.2e-0765.12Show/hide
Query:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWS
        +KRQY AI EML + C+GFGWN+EFKC++ EK+VFD W  VWS
Subjt:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWS
TrEMBL top hitse value%identityAlignment
A0A1S3CI24 uncharacterized protein At2g29880-like5.8e-0873.68Show/hide
Query:  RQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
        +QY AI+EM+G  CSGFGWNEE KCIE EK VFD WVK
Subjt:  RQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
A0A5A7U7F7 Retrotransposon protein2.0e-0872.5Show/hide
Query:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
        +K+QY AI+EM+G  CSGFGWNEE KCIE EK VFD WVK
Subjt:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
A0A5A7UHB1 Retrotransposon protein9.9e-0857.78Show/hide
Query:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWSFL
        +KR + AI+EM G  CSGFGWN+E KCI  EK++FD WV+VW+ +
Subjt:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWSFL
A0A5A7UZR1 Retrotransposon protein9.9e-0857.78Show/hide
Query:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWSFL
        +KR + AI+EM G  CSGFGWN+E KCI  EK++FD WV+VW+ +
Subjt:  MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWSFL
A0A5D3C542 Retrotransposon protein7.6e-0873.68Show/hide
Query:  RQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
        +QY AI+EM+G  CSGFGWNEE KCIE EK VFD WVK
Subjt:  RQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGCCAGTACAACGCAATATCGGAGATGTTGGGTTCAGGTTGTAGTGGGTTTGGATGGAATGAGGAGTTCAAATGTATTGAAGATGAGAAGAAAGTGTTTGATGC
ATGGGTGAAGGTATGGTCATTCTTGATTCATAGGTATCATGCTCGTATATTATCTTTGCTAATATCCACTTCCATATATGCAATCCCACTCAGCTACCAAAGGACTCCTC
AACAAGCCATTTCCTCACTACGAGGAACTGTCGTTCGTCTTCAGAAAGGATCGAGCAAGTGGAGTGGGGTGTTCCGTTCCAGCGGAACAACACCGAGGTCGAGTTTGAGG
ACGTCCCCATCACACCCACTAGTCGACCGAGCACCGCCGGGTCCTCGCAGGGATGAAAGAGGTCGAGGGCATAGACACAAGGGAGTTCAACGTCGCGACACAGTGTCCGA
GATGCTCCTGGCCCAGTCGGAGCTGACAAATGACGAGAGAGTGTCCCTAATGCGTATTCTCTTCGCCGACCCGAAAATGACAAACATGATGCTTTCTGTCCCACCGTCCT
TAAAACTGCGATTCCTACGATGTTTATTAAATGAGCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACGCCAGTACAACGCAATATCGGAGATGTTGGGTTCAGGTTGTAGTGGGTTTGGATGGAATGAGGAGTTCAAATGTATTGAAGATGAGAAGAAAGTGTTTGATGC
ATGGGTGAAGGTATGGTCATTCTTGATTCATAGGTATCATGCTCGTATATTATCTTTGCTAATATCCACTTCCATATATGCAATCCCACTCAGCTACCAAAGGACTCCTC
AACAAGCCATTTCCTCACTACGAGGAACTGTCGTTCGTCTTCAGAAAGGATCGAGCAAGTGGAGTGGGGTGTTCCGTTCCAGCGGAACAACACCGAGGTCGAGTTTGAGG
ACGTCCCCATCACACCCACTAGTCGACCGAGCACCGCCGGGTCCTCGCAGGGATGAAAGAGGTCGAGGGCATAGACACAAGGGAGTTCAACGTCGCGACACAGTGTCCGA
GATGCTCCTGGCCCAGTCGGAGCTGACAAATGACGAGAGAGTGTCCCTAATGCGTATTCTCTTCGCCGACCCGAAAATGACAAACATGATGCTTTCTGTCCCACCGTCCT
TAAAACTGCGATTCCTACGATGTTTATTAAATGAGCGCTAG
Protein sequenceShow/hide protein sequence
MKRQYNAISEMLGSGCSGFGWNEEFKCIEDEKKVFDAWVKVWSFLIHRYHARILSLLISTSIYAIPLSYQRTPQQAISSLRGTVVRLQKGSSKWSGVFRSSGTTPRSSLR
TSPSHPLVDRAPPGPRRDERGRGHRHKGVQRRDTVSEMLLAQSELTNDERVSLMRILFADPKMTNMMLSVPPSLKLRFLRCLLNER